G145031


Basic Information

Item Value
gene id G145031
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13257922 ~ 13258861 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU182393
aaaaatatctgaaattacTCAGCTCTCAATAGCTtgcttttaaagttattttttaattactattattattaatttaaagactTTTCTGTTTAAACCATAATACAAAAAGCAGTGGTATTAACATAAAAGAGTtgactgctgtttgttttagaGAACAGCAATTAACAGATTCCTCTTGAATTGGTTTTAGGCCACACTTGAATGTCAGGAATTTTATCATTAGGGTTTTTTGCTTGGGGATGTCCAGAACATTGTTAAGGATTTAtttcccttatttatttttttaagtaggaTTTTTTGatataatactttttatataaatggaaatgtataaaaccaaAAAGTATTATGCTGTgaggtgttttgtttgtttgtttcttaatgttATGGACCAATACCGGAATACATCTGGTGTGAAACTTCCCAAAACATTTatcaaagaaaaatgcattttataaaaaacaGTTTATGTAATTCATTTGTATGTTAAAACTAGGGTACATTAAGAAACACTTTGacatttttagttattttaattttatttttttcaagacTCTACATGCTTTTCTATATCACGGTATAGGAGTAAATGACAGATTAGTCCAATATGCTGCCGGAATTTCCCCTGTGATGTTGAATAACTTAAATTCCTTTTTACTtacaaacagcaacaacaaagagCCTCCGTTATAGAAAATCCCAGCTGCTGTCAGCACCACACAGCCCGGTCATCTGCTTTCTAGATTTTTCAAAATCCGTGTTGGAAGAAGTAAATGAGCAGCTCATAGCAGAAGCAGTGTTCAGTTTTTATCCTGCAAATCtgaatgtctgtttattttttctgatacCTAAGTGTGTTCAATAATGTTATAATTTGATTGACCATAGTTGTATATTTGTAGCATTTTTTTGTACCTTTGATATTCACAGCTGTCTGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182393 True 940 lncRNA 0.31 1 13257922 13258861

Neighbor

gene id symbol gene type direction distance location
AMCG00005038 eif2b3,LOC106569082,LOC107558289 coding downstream 39745 13183675 ~ 13218177 (-)
AMCG00005034 ptch2,LOC106569083,LOC106599390,LOC107557169 coding downstream 87575 13139180 ~ 13170347 (-)
AMCG00005025 atp6v0b coding downstream 308967 12939515 ~ 12948955 (-)
AMCG00005027 b4galt2,LOC106599387,LOC107700994,LOC107557142,LOC107713046 coding downstream 350207 12904465 ~ 12907715 (-)
AMCG00005026 b4galt2 coding downstream 415747 12818610 ~ 12842175 (-)
AMCG00005040 NA coding upstream 1354 13260215 ~ 13262868 (-)
AMCG00005041 NA coding upstream 4382 13263243 ~ 13295419 (-)
AMCG00005037 NA coding upstream 42262 13301123 ~ 13306960 (-)
AMCG00005039 NA coding upstream 50683 13309544 ~ 13313577 (-)
AMCG00005036 mrps14,LOC107658361 coding upstream 56529 13315390 ~ 13317852 (-)
G144954 NA non-coding downstream 442404 12812977 ~ 12815518 (-)
G144941 NA non-coding downstream 476752 12780573 ~ 12781170 (-)
G144920 NA non-coding downstream 641972 12615715 ~ 12615950 (-)
G144893 NA non-coding downstream 889454 12367423 ~ 12368468 (-)
G144880 NA non-coding downstream 953035 12304623 ~ 12304887 (-)
G145129 NA non-coding upstream 802860 14061721 ~ 14062111 (-)
G145130 NA non-coding upstream 803483 14062344 ~ 14062624 (-)
G145131 NA non-coding upstream 804004 14062865 ~ 14063123 (-)
G145138 NA non-coding upstream 898719 14157580 ~ 14161976 (-)
G145146 NA non-coding upstream 921243 14180104 ~ 14183513 (-)
AMCG00005022 NA other downstream 909594 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 1101544 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 4351328 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 4410147 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 4880921 8353989 ~ 8377001 (-)
G145046 NA other upstream 77348 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 1705553 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 2244221 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 2699843 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 4284285 17543146 ~ 17546332 (-)

Expression


Co-expression Network