G145441


Basic Information

Item Value
gene id G145441
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15261347 ~ 15266948 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU182938
GCATCTGTCAGGCATGTTTACCCTGGGCcaagaaaagacacaaaacgCATTCCCAGATATTAGGAGCTTGTGTCAGTACTTCATTCAAACTTTTGTATTCAGCATCCTACTCACCAGCTGCTTCCAAAGCCTCACTATTTATAACCAAAACCAACTTGAAGACTCTTTTTTCTACCGTTTTCTATATGCAAAGCTACTACAACCACACTCCAGTTTCTTCATGattgcttttaattgtttttcaaaatgatcaCATTCAATAAACagcatatatacaaaatatttcatatGAAAATTTCAGACATGGTTTAAATCTGCTTCTGGAGTAGACCTGTATGGAGAGTCACAGTCCTTCAGcagaacaaaattacatttgcaattaaaacacacatatttctCCTTAACTAGCAAGCCTTAAAATTCACCATGTCTATGCAACTCCAgctcaatgtatttattgatctgACTGCAGTTCAGGATTTCCTTTACCACAGCCAGATTAAAAATAACCTGGAGTTGCACAGCCAAGATGGAGGAACACTCAGCTCCCCCTgctgttaaaaatgtaagtcTCTTTCACTATTTTTGGTTTACAAATATTCTATAtcagattaaatgcatttgtaacaaaaatatatgtatttatatctttCTGAAAAAAGTagtagaaatatttaaatatgaaaatcatatatttacaatatttaataaggcACAAAATATTGCTGctgaataaaactgaattactttgatgaagcaaataaaaaacaggaacGATTCAACCAATTTCAAACCAAGATAGCATCCAATGGCAACTGACCACCCCGCCCTTCCTTACTAAGCTAATAATATATcaataagacaaaaaacagaagttaaTTGTAACACTCTCACCCATTTTGAAAACTGTAGTTTTGCTGTTCTATAAATTTCAGTTGTGAATTGaagcacattaaaatgttttaaactgttcaCTGTACCAAGGGCATTCTAGTGATTCAAAGTCATGGCATATGCACAGTATTTTTccactttacttttttttccccttgtaaATGACATACAGCTGGGTGTTGAAGGCAGTGGATCACCCAATATAATttcactgtataaaataataatataaattcagGAATGATTAATACAATCTTTCCTCCAGTCTTCCAAAATGTATAATCATTAGCCATAAAACAATCAGCCTCTACAGTATTGCGTTGCTGTAATGACCTCATTAATTGGTCaagagcaaagaaaataaacaaaatgtttgcaaCCCTGCTTTCTATAGCAGACAGTTCGTTAATGAAGCAATGAAAGGAAGACAGTGCAACTGATAAAGACCATAGTAGATGGTAccaaataatatacacacacacatatatatatatatataaaaaatatctttCACATTATATTACTTTCACTGTTAATCAAgaattctgaaatatattattgtaaaaatacatttcttggaAGGCTGGTGTAGACATCACAATTTTTGATGATTACACTAACATTTATGTTTATCATAAAacaacttgaaaaacaaaaatgctataaaaaaaaaagctcttgcTCTCTAGTATCAAACAATCCATCTGCCATCAAAACAACTGCTGTCCATTGCTCAAGCACCAAGAAAATCTACAATAAGACAGAAATGTGCAACAACCTCACATatgcagctttaaaaaaaaaaaagcaaacatctCCAAATAACTTCAAACATAAAATCAGGTTGCTGTCTAGTTATAACTTCTTGTTTTTGGACTTAAATGCCCCTCTCTTTACTGAGATTTAAACTGACAATATTCTCTCAAAATGTTCTACAATTTCATACTCTGACTTCCTTATTGTGAAACTTGTGGAAAAAGGACGGTCTACATATTGTCTGGATTGAAATACATCAAACAGACAATTGTCAGTGCTTGTCAGAACTTTTCTGTGTCTTCCTGAAAGGGGTTAGTTTCAAAAATCACAGCCTTGCTGTTCAATACTTCCCTCAGTATTAACAGGCAGAATTAAGTGCGAAATCCGGCTCCAAAGGCCACCCAGTTTGTCTCTGTCCATGTCTTTGAAAGATGCTGGTTCTCTCGACTTGAGGAATTTATCCTCAATGTGATCTCGGACCTTCTCTTCCACCTCACCCAGACNNNNNNNNNNNNNNNGCTCATCCTCATCCAAGACCTCCATGTCTTCTTCACTATCAAAGTTAGACTCCTCATTTTCAGGTTGATTCTGACCTCTTCTGAGCTTTTGTGGATAAGCATAGTCTAGAATGAGGAGCAAAAATCATGATATAAGCAGGCAGGGGGCTATAGGTGTCCCCTGCGAAGACCACGTCTAGAGATGGAAGCTTCCTCTCAACGTAtttctgaatgaatgaaaacatttgaa

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05310 Asthma
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection

RNA

RNA id representative length rna type GC content exon number start site end site
TU182938 True 2397 lncRNA 0.35 2 15261347 15266948

Neighbor

gene id symbol gene type direction distance location
AMCG00005092 olfml2b,LOC101471195,LOC102214710 coding downstream 12052 15242561 ~ 15249295 (-)
AMCG00005093 NA coding downstream 78503 15165446 ~ 15182844 (-)
AMCG00005088 NA coding downstream 99162 15154428 ~ 15162185 (-)
AMCG00005087 NA coding downstream 142096 15117757 ~ 15119251 (-)
AMCG00005089 NA coding downstream 159488 15093955 ~ 15101859 (-)
AMCG00005108 NA coding upstream 18755 15285703 ~ 15304821 (-)
AMCG00005109 NA coding upstream 44645 15311593 ~ 15333520 (-)
AMCG00005106 NA coding upstream 81687 15348635 ~ 15351466 (-)
AMCG00005107 NA coding upstream 93025 15359973 ~ 15369988 (-)
AMCG00005101 NA coding upstream 151627 15418575 ~ 15436970 (-)
G145436 NA non-coding downstream 3683 15255889 ~ 15257664 (-)
G145434 NA non-coding downstream 6459 15253513 ~ 15254888 (-)
G145401 NA non-coding downstream 111755 15145798 ~ 15149592 (-)
G145387 NA non-coding downstream 155897 15105218 ~ 15105450 (-)
G145358 NA non-coding downstream 192234 15068413 ~ 15069113 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding upstream 1107714 16374662 ~ 16375417 (-)
G145760 NA non-coding upstream 1697255 16964203 ~ 16965074 (-)
G145995 NA non-coding upstream 2757817 18024765 ~ 18025674 (-)
G146022 NA non-coding upstream 3030899 18297847 ~ 18298103 (-)
G146023 NA non-coding upstream 3084919 18351867 ~ 18352132 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 292105 14964414 ~ 14969242 (-)
G145046 NA other downstream 1924601 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 2913019 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 3104969 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 6354753 8872885 ~ 8906594 (-)
AMCG00005111 NA other upstream 236134 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 691756 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 2276198 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 3474936 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 3746129 19013077 ~ 19024461 (-)

Expression


Co-expression Network