G146023


Basic Information

Item Value
gene id G146023
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18351867 ~ 18352132 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU183675
cctctctgtgtgaagaagtgtctcctgttttccattttgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttgaatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcagttcctcagtctctccgagtaggactttcccttcagacctggaataagtctggttgctctcctctga

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU183675 True 266 lncRNA 0.48 1 18351867 18352132

Neighbor

gene id symbol gene type direction distance location
AMCG00005178 NA coding downstream 242414 18103258 ~ 18109453 (-)
AMCG00005179 NA coding downstream 262752 18087405 ~ 18089115 (-)
AMCG00005186 NA coding downstream 277944 18070432 ~ 18073923 (-)
AMCG00005187 NA coding downstream 285499 18063829 ~ 18066368 (-)
AMCG00005183 NA coding downstream 302623 18046691 ~ 18049244 (-)
AMCG00005193 NA coding upstream 190419 18542551 ~ 18545413 (-)
AMCG00005196 NA coding upstream 326934 18679066 ~ 18684796 (-)
AMCG00005209 NA coding upstream 381828 18733960 ~ 18738143 (-)
AMCG00005208 NA coding upstream 423336 18775468 ~ 18781565 (-)
AMCG00005202 NA coding upstream 454939 18807071 ~ 18813335 (-)
G146022 NA non-coding downstream 53764 18297847 ~ 18298103 (-)
G145995 NA non-coding downstream 326193 18024765 ~ 18025674 (-)
G145760 NA non-coding downstream 1386793 16964203 ~ 16965074 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 1976450 16374662 ~ 16375417 (-)
G145441 NA non-coding downstream 3084919 15261347 ~ 15266948 (-)
G146189 NA non-coding upstream 731863 19083995 ~ 19086041 (-)
G146227 NA non-coding upstream 866259 19218391 ~ 19219758 (-)
G146257 NA non-coding upstream 1111875 19464007 ~ 19464975 (-)
G146315 NA non-coding upstream 1258634 19610766 ~ 19611005 (-)
G146322 NA non-coding upstream 1351872 19704004 ~ 19732117 (-)
AMCG00005158 NA other downstream 805535 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 2373012 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 2816722 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 3382625 14964414 ~ 14969242 (-)
G145046 NA other downstream 5015121 13336209 ~ 13336746 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 389752 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 660945 19013077 ~ 19024461 (-)
G146313 NA other upstream 1217927 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 1406100 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 1647035 19999167 ~ 20023507 (-)

Expression


Co-expression Network