G146172


Basic Information

Item Value
gene id G146172
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19048548 ~ 19053126 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU183880
TTCacctttttattgatttgtgcaTTGCACCTCATTAATATGTACAGGTTGGAATGGGTAACGGAACCAACAAATCACAGGAACAGACTCCACGTTTCAGTAATACTTTTACAGCAGACAAGCAAACACATAATTGTATCAAAAACTCACCACCTTCTCacaataattgttttgaatagTACACATCCAATATGTCAAGGTTAGCTTGAACATCGCTGTACATTTCAAAAGACACACATGTTCAGTAAACAGGGGGGGTGTACTTTCTAAAACAAGTCCAGTCACTGTGACTTTCTGTGCACTGTATAGATTACGACAGGTTACTTGATAGGTCTATGTATACTCTTCACTTAATCATAAATGCTGCAGTAGTACTATCCCTTCTCTGTTtggcatttattaaacattattcactaatgaaattaaatagtcTGTGAATAACAGGAGGAATCCACTATTATCCATTGACAAgagttacattttacatattataaGACAAATACCTTTTCCTAACATTGTACCATTGTGCCAACACACCAACAGGCATTTGAAGTACCTAATGTGATAACGTTTAATATTgtacatgcaaaatatattttaataactgtcTCTTAGTGGATTTCGCTGTTATTCctgaactatttatttacatttagtaAGTAAAAATGCTTAATTGTGTTCTCCTGTGGATGCACTTAATCATAGAAGGGAATTTAGCTAAATGTATTTGACTATATTTCCAAAAGACTTCTGCATACTTATACTGATGCTATAATTATTATAAGCTCAGGCCCAGGTACATACCGACATTTTTCTCTCTTACAACATAGGTGTTTTCATAAAAGtgccaaaacaaacattatcaTATTCACACAAAATAAGCGTTGGGGTTTATACAGTACATGTATTGATATTTCTCATGTCAGTGTCTCTTTACAGCACACAGCTCAACAGTTCTGAAAGATATTAGAGGCTTCACTGGCCgaatttccttttcaaatgactattcaagaaaacaaatggaatatCACAATTTTTTAACAATAGAAACCAGATTTCATAGTTTCATTAAAgcaataatgtatattatttttaattaaactaaaatagcCTTCATGGAATAACATGTCTccataaataaagatataaagtTATCATctattaaaggaaaatatatcgctaaataaaatatttgtagcatcttaaaataaattatattttgtgacCATTCATTGTTtcagcaaatatttaaaataggaaaaaaatgtatgggaaaaacaaacacacagaaaacacacgtGCTTTGACAATTTCACCGTGACAGTGTTGACCAGATTGTTTAGGACAGAAATATTTCTCCACAAGGTGTAATACTAGGCTGGACTAATAGTTCAGTGCTACCTGTAAAATTGTTTCCATGTACCagggatttattttcaaaaatgtaataaaaagacTGCCTTTAAGGAATGTCCTTGAGAGACTTCTGTAAACATAACAAGTTCACGTCAGTATATTACAATGAACTCCAGTCATCCGCTTTATTGAATGGAAGTTTCTCAATTTCAATAGAGAAGAGAATTACGCTTCATTATAGCGTAAATGTGACTAATCTGCCAGAAGtagaaacaaaagacaaaaaacacttttcacaAATGTTTCATAAGGCTAAGAgcttaatgaaataaatagaatgaagtttaaaacacaagagctgcagttattgattaaaataaataatacattttattaaataaataaataaataaatagttaattaaCTCGGAATTCCATTTTATGAAGAAACAGAGCCTTGCCAGTTATCTCAGCTGAATAACAGTACTTTCATTCAACTGTTTTAGACTTTTCAACagttaaactaattaaattagaaagatttaatttgttttattcgtGGGTTGAATCTTTGTTAATAGAAGACAGTCAGCTGTTCTAACAAATCAATTGCTATTCCAGCCACATCAGTTTGGTGCATTTCATTACTAtgagaattatttaatttgtttaaattgggttgacaagattatatatatattatatatatatatatatatatatatatccttgcCACATCTGATCCTAACTTTACTCCTAAAGTAGTTGCAGGAATGGTTACAATTGATTCTTGTAATGATTTTCTTGCTTATTTGTTAGTGGTGGGTTTTTATCTTCTTCCGTGCTTGAAATTCTAGTCTAATATGTTGTTTAGATAGATATTagttcatttttcattaatgtCTGCTATGCCTGCCTTCAATCAAAATGTTACATCAGCCACCAATCACAaatagtgtttttgtttcctagAGGTCTTTACTTCTAACCAGTTGACATCCTCAGTCAAATATGGGATCAgctgatattttgttttaacaagcATAGACCAACTATAATTCTGACTTACCCATGAATCATTAATTACAAACCTGTCAACttagtggcttctgacaataaatcaCACCGCGATAGGCTACATGTTTCTATTGGACAGTTTGAGATGAGgaaaaactttttatttggtCATTTTGTAACTGTATTCCAGCAGAAATATTTATGTTGAGCCATCACAAAATGTCTAAACCAGCTTGGCACTTTAATAACCCAGAATTTGGGACCAAGAGCAGGTTAAGCACTTCTCTGGATGCAGTCTCTTGAAACCGGCTTCAGGAAGTAATTTTAGGGTAATTGTACGACTCCATGAAgactgcattcattcattcgcTTCATGCACTCAAATACAAAGAGactgttaaaaaagaaaagaaaaataacaactaaaatctgaattaaaaacaaactccctCCGTTTACAACAGCTTAGGTTACCTCTACTTCTGCAGGGCAAAAACACACCTGAAGGAAATATTTTGGTCAATTTACTCAATTCAATGTGATGCATTTGTAATCGCTGGAATTGTATTTAAAGCTATAAACATTGATAAACTCATCTTTTCATGTAAACAGCTTCTCATCGATACAGTACACCTCAACCTGCGGTGATTACAGATCATTaataagcaaaagaaaatacagtttcgtaataaaataatatagaggcttttctaaaaagaaagcaaacatttcCAGGGTGGTCCACTATGGATGAGACATCTGCAGACAAGGTCACCTGACAGAAGCCTTGGAAAATCTCCCAATCTTGAATTGTAGAAATAGTGGGCGTAGGATCTATGATACACTGTTCGGTATGCCTAAATTATCTTCATGTCCCATCATGTGTAGAGCCTAGAGGTTCATTTCTAATGCTCGTCAGCAGGCAGATGTAAAAGCCAGGTACACAAATTTGATGATTCAGATGCTGTATATTATTCTCCACACAGGGAGACGGGAAGGATGCCAAAGGTCTTCAAAGATAGGAGCGTGTAGGAATGGTTACTCACCGTTTTACTGTTTTGAAtgccaatgaaaaaacaaaatgacatggGAATATTCTCCATTCCCCACAGGTCTCAAACTGACGCTGAtttatttcatttcacttttccaCTACGCAGTTTATAACCTCCGTGTGGGGGTTGTGTTCGCCCATCGCTAAGTGTGTATTTATCATCATCTGCTCTTGGCGGCCGCATGCTTTCCGTGTTAAATCACCACGGCCAGCTGCCTTCCAGAGTGAGAAAAATTAAATCTATCATTTgatctttcatttaattatcgCTGATGCAGGATTTCCTTGGGAGTAATGTACCGCACATAATACAAGCTGAAGTCAGAGGGGACTCTGTGCAAATGTGAAACTAATTTGTCTCTGCATGCAGCTGTCgaaagtgtgttttattttattgtcctgCCGAGTTCATAACCATTAGAGTGAATACCTGTAATGGAGTATAGCTCACTCCTTCAAGCCCCTATTCAACTCTCTTTATCATATTGAAAACCTGTTTAAAGTTCAGCCCAAAGCACcttatttcaaacattaaaacataataagtGAATGGTATTGTGGACAAAGATCTTTCACTGACCATCAGTGAATGTCTCATCGATGCTGGACCAccctgttttccttttttgtgtgttcaaGTTTCTCTCAAAAGTGTTCTGTACAAGACAACCttaacattttccatttgacaATGTGCACCAGTTGAATGGGTGAGTCTGAGGTTTACATCTAAACAGTTAAATCTGTATACCAACGTCGCTATGGAAAGGAACCCACGTGACAAGTGACgataataagaattaaaaaaataagaggaaTCACAGCACAGATCTGAAGGGAGAGCAAATCATCGGGAGGGCTTGGACTTTGTTGCATTTCAATACAGTGGCTTTTGTCCTTGGCTATCAAATTCTGACCAGGCATCATTCAATTCCATAAAAATCATCTTGGCATATTGTTCATACGGCTGCCCGGTAGCCTTCAAAAAAGGAAGAGgagatattttattacatacatatatctttT

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG:

id description
ko04911 Insulin secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU183880 True 4453 lncRNA 0.35 3 19048548 19053126

Neighbor

gene id symbol gene type direction distance location
AMCG00005197 NA coding upstream 222056 18824891 ~ 18826492 (+)
AMCG00005198 NA coding upstream 242058 18793732 ~ 18806490 (+)
AMCG00005203 serbp1a,LOC107724138,LOC107551037,LOC102797140,LOC107684131 coding upstream 294958 18741992 ~ 18753590 (+)
AMCG00005204 NA coding upstream 314620 18728705 ~ 18733928 (+)
AMCG00005205 ddr2,ddr2a,LOC106584138,LOC106560289 coding upstream 322333 18713405 ~ 18726215 (+)
AMCG00005217 NA coding downstream 39101 19092227 ~ 19115694 (+)
AMCG00005231 NA coding downstream 499337 19552463 ~ 19564086 (+)
AMCG00005239 NA coding downstream 648337 19701463 ~ 19704317 (+)
AMCG00005237 NA coding downstream 656210 19709336 ~ 19711528 (+)
AMCG00005238 NA coding downstream 689227 19742353 ~ 19755790 (+)
G146140 NA non-coding upstream 151821 18893067 ~ 18896727 (+)
G146091 NA non-coding upstream 284250 18764043 ~ 18764298 (+)
G146090 NA non-coding upstream 290677 18757667 ~ 18757871 (+)
G146088 NA non-coding upstream 291953 18756075 ~ 18756595 (+)
G146043 NA non-coding upstream 505708 18541256 ~ 18542840 (+)
G146188 NA non-coding downstream 30893 19084019 ~ 19084317 (+)
G146202 NA non-coding downstream 64405 19117531 ~ 19195204 (+)
G146222 NA non-coding downstream 165305 19218431 ~ 19219345 (+)
G146256 NA non-coding downstream 410870 19463996 ~ 19464975 (+)
G146303 NA non-coding downstream 516347 19569473 ~ 19570003 (+)
AMCG00005199 wdr78 other upstream 226906 18815029 ~ 18821642 (+)
G145932 NA other upstream 1277023 17765257 ~ 17771525 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 3663737 15379599 ~ 15384811 (+)
AMCG00005060 LOC106599426 other upstream 4860219 14155155 ~ 14188329 (+)
G144940 NA other upstream 6267378 12780580 ~ 12781170 (+)
AMCG00005232 dock7 other downstream 422013 19475139 ~ 19530453 (+)
G146305 NA other downstream 526447 19579573 ~ 19579807 (+)
G146519 NA other downstream 1129228 20182354 ~ 20184643 (+)
AMCG00005272 mast2 other downstream 1199883 20253009 ~ 20279786 (+)
G146575 LOC103468264,LOC108238356,LOC106512499 other downstream 1468523 20521649 ~ 20524819 (+)

Expression


Co-expression Network