G146189


Basic Information

Item Value
gene id G146189
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19083995 ~ 19086041 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU183906
ttttatttataaaatacagacaaaattataaaatggaCATTGAAAGACTTGAAATGAAAGTTATTTCAGCTGTGTGAGTATCTATAGAGCAAGTGTTGTATTAAACATCCACACAATAATTGTTGTTGCTGCCTGGCTTTTGTTAAGGCATTCATGGGCTGGTGTAAACTTGTTTCTTAGCTTTTTGGAAGTTATAAGACGAATTGCTAAAAGCAACATGCATCACAGGACAAACATCTGTAACTGGCTGAGCTGCTGCCCAAACACAGTTCTCAAGGACCCCTATCCTCcaggttttataggtcacctttaattatcaatttcttaacacctggaaccatttcaatgtgatcagttaagcaggtgatttgtgaaatgtaGTTATGCAGAGATttggtaaaaagaaaacaaactaccCTTTTCAGCCCTCAATGACAAGAATTCCCATAATTGAACAagtgaattgcttaattgatcagtaACTTCCACATGATCCCGAGCTGTCGAAACTCTGATTTATACCAATATTAAACCAGCATTGTAGGTAGGTGCACAGAAAACAATAGGGAGGAAATGTCTGTGAACTTCCACAATCTTTGAGCCTCCGAGATAAAGGAACTCACTGTGTGGATATGGGGCAAAGATCAAAGCCAGTATAGGGTtgtgatgtcatgttttatcaGCATGTAATATGGAAGGGAACTGAGCTGGTGTTGTGTAGAGGAAGCAGATTAAAGTTAGTGTAATGTGTGTAAGGATACTTTTCTTTTGTTGCTCTTTTTATTGACATTCTAATTGCCTTTTATAATTGgcattatttgtctttttaaaaatacaattattcacaGTGTGATGATTCACTTCTCTTTGCCATCAATGTGTTGTGTTTACTATTCTGACAAGGCAAAGGAGGAACAGGGCACTTTTGTTAATTGTTGTCTCTTGAAGGGGCACTCATGACAAATTAATGTCAACAAAAATGTTTCTACCAGGATGCTGTGATTGTATTTAAAGATtccataataataacatgtatgTCATGGAATCACATAATACAATgatatgcaataataatgacaataaaaactAGACATGAAAGATACTTAGTCTGCATGTGGCAATACTTGCATAAATTATTCCtgattatgtattatgtgtgtTGATATGCAGGTTGGTATCGGTGATGGTTTATAGATTAGTCTAAGCGGTTTATCACAATTTGGTTTAAGAGAACTAATACATCATAGTATGTGACAGTAAGTCACAACTACTGATCCTACAGTGGAAATAGCACCCCAGACTAATTCGTTTTTACATCATAGCCCCTTAACGATCCCGATTAGGAACAACAGAAAAAGTGTTGTAAGAGAGTagaaaatgtcatatttcaCCAAAAAGTGTAATACTTGATACAAAAATGCCATACTGGACAACAAAGTGTCATACAGGTCCAAAGCATATCACACAGAAGCAactatgtattataatgtattgttattacaCTATAATGTTACAACTACAACTCTGATCATATTACTGCACACAAACCTAGGGCCATTATTGCTCAGGGAatgggtgtgtctgtgttattcTAACttatttgctgtgtgtgtgttattcttCGTGTTATTCttacttattttgtgtgtgtctctgttattcttattttcagtgtgttatttttacttattttctctgtgtgtttgtgttattcttatttgctgtgtgtctgtgttatttaagttttctgtgtgtgtgtgtgtgtgtctgtgtgcataaACCCCTCCAGGCATTTGAAGGAACAAATATAGTTTtggtttagtttatttattcactgtCAAAAACTcagatgtttaaataaatacatataaaacaatggtaacaataaaaacaataaaaaacaccacGACTCTtgataataaaactgaaattccACCTCTCCACCCGACACCGTTGCTTCTTTCACACCGAGGCGTCTCTGGTGCCAAGATGGCTGCCATCCTTCAGTTATCACAGTACTGTACCTATAAGATGGACAGCATCAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU183906 True 2047 lncRNA 0.35 1 19083995 19086041

Neighbor

gene id symbol gene type direction distance location
AMCG00005213 NA coding downstream 3392 19072155 ~ 19080603 (-)
AMCG00005215 dnajc6 coding downstream 16888 19052978 ~ 19067107 (-)
AMCG00005212 LOC106598444 coding downstream 36630 19042820 ~ 19047365 (-)
AMCG00005216 NA coding downstream 101955 18978635 ~ 18982040 (-)
AMCG00005211 NA coding downstream 111133 18911161 ~ 18972862 (-)
AMCG00005218 NA coding upstream 34123 19120164 ~ 19146827 (-)
AMCG00005224 cachd1,LOC106584031 coding upstream 65949 19151990 ~ 19201412 (-)
AMCG00005225 NA coding upstream 121697 19207738 ~ 19216139 (-)
AMCG00005223 NA coding upstream 133785 19219826 ~ 19226999 (-)
AMCG00005226 NA coding upstream 157658 19243699 ~ 19244617 (-)
G146023 NA non-coding downstream 731863 18351867 ~ 18352132 (-)
G146022 NA non-coding downstream 785892 18297847 ~ 18298103 (-)
G145995 NA non-coding downstream 1058321 18024765 ~ 18025674 (-)
G145760 NA non-coding downstream 2118921 16964203 ~ 16965074 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 2708578 16374662 ~ 16375417 (-)
G146227 NA non-coding upstream 132350 19218391 ~ 19219758 (-)
G146257 NA non-coding upstream 377966 19464007 ~ 19464975 (-)
G146315 NA non-coding upstream 524725 19610766 ~ 19611005 (-)
G146322 NA non-coding upstream 617963 19704004 ~ 19732117 (-)
G146347 NA non-coding upstream 668155 19754196 ~ 19754744 (-)
AMCG00005214 NA other downstream 59534 19013077 ~ 19024461 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 319697 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 1537663 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 3105140 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 3548850 15503082 ~ 15535145 (-)
G146313 NA other upstream 484018 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 672191 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 913126 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 1017585 20103626 ~ 20107827 (-)
G146532 NA other upstream 1188350 20274391 ~ 20279746 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032118 dre-mir-101a non-coding NC_007117.7 CM002890.2 31365446 ~ 31365526 (+)
eurasian perch (Perca fluviatilis) G95040 NA non-coding NC_053120.1 CM020917.1 13146305 ~ 13146795 (+)