G146227


Basic Information

Item Value
gene id G146227
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19218391 ~ 19219758 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU183949
ctgtaaataaataaatgaagccGGAATGACATGCaaagatatatatacagaaatgttttataatgagaaaagaaaagagaagtcGCTTCTCGAACACCACCGATGCCTTTAACCGTCTCGTGCCGAGAGAGAGCAGCTCCCTTGCGAATCTGTCCTCCGAGTTGACCGTCGCTTTATTAGGTTATTGCGATTACAGGTGAGGTGTTTTAtggctggtgctggtgctggagtTGATCAATTTGGCTGCACTTCCTGTTACTTTCTAACTGTTACTGTCttggtttcctgtttttctgaTTGTCTTAATCATTATTCTACGTTCTTATTGACTATTCCAGTAAAATGTTTTCTGGAAGGACTGACCGATGATTGACACAGGAGTTCACTGCGACATAAACTCACAAGGGCTTTATAGAAATGGTTTTGCAATcagaaatcaatcaaacaattatgttttaactCTAATATCTGGTTAATGTGATGTATCCACTAgccatccctctctcctcctttaGTTTCTCCCTCTGCTATGCAACATGTAGCCTTAATAAATGCAGTCCTCACGTATTTGCTGTTTATGAAGAAGTGGGtctaataaatgtgtgtattcaaTGTGATCCATTTGAATGTTGTAACCTATAATTTaatatcttttttatttgatttgtgtgCAAGGACTGGACTGAAACGCATTAGACAGAATACAGGGAGTTTGCTAAAGCGTTGAATCCTGTTTCGATTGAATCCTTTAGActtatttttaaaggatttatATAAGCAgctatatttcattttttgaatatatttgttgCTGTGCAACTGTTAAATACAAAGATCCAAAATCCACTCGTATAGAAGACAATCATTTTTACGACGGTTCATCAGGGGACAGAGCTAAATTGAagcaaagcagagaaaaaaCCTGACAACCCAATCAAGCATCTCTgggattttatatattgtattatcatgatcaatatcattattatcattattattactagcatttttattattcatcaaCTTCATAATAAATCCCAATCTGTGAAGTTTGTGAGACACCGTTTTGCCTACCTAGGTACCTGCAGTTTTATACAGGTATCCTTCGCTATTATAGAGATGTATTCCAGTTAAAACCACTTTAACAAAAGACTGTGAATCCAGTGGGAGAAGTTTTGTGCGTTTAGGACAGTCTTTTGTAGTATTTTTGTAGAGTTCAGTCCGTCGGATTACAAATACACAAGGTTTACAACTTCCAGATTGTATTGAACGAGCGGCCTTCTTTCTTTCGTGTTTGTGAGAAGATTTTTGCACAGATGTTTTGtatggcaaaaaaaaagaaaacaaataaattacatcttTGTGTGT
>TU183950
ctgtaaataaataaatgaagccGGAATGACATGCaaagatatatatacagaaatgttttataatgagaaaagaaaagagaagtcGCTTCTCGAACACCACCGATGCCTTTAACCGTCTCGTGCCGAGAGAGAGCAGCTCCCTTGCGAATCTGTCCTCCGAGTTGACCGTCGCTTTATTAGGTTATTGCGATTACAGGTGAGGTGTTTTAtggctggtgctggtgctggagtTGATCAATTTGGCTGCACTTCCTGTTACTTTCTAACTGTTACTGTCttggtttcctgtttttctgaTTGTCTTAATCATTATTCTACGTTCTTATTGACTATTCCAGTAAAATGTTTTCTGGAAGGACTGACCGATGATTGACACAGGAGTTCACTGCGACATAAACTCACAAGGGCTTTATAGAAATGGTTTTGCAATcagaaatcaatcaaacaattatgttttaactCTAATATCTGGTTAATGTGATGTATCCACTAgccatccctctctcctcctttaGTTTCTCCCTCTGCTATGCAACATGTAGCCTTAATAAATGCAGTCCTCACGTATTTGCTGTTTATGAAGAAGTGGGtctaataaatgtgtgtattcaaTGTGATCCATTTGAATGTTGTAACCTATAATTTaatatcttttttatttgatttgtgtgCAAGGACTGGACTGAAACGCATTAGACAGAATACAGGGAGTTTGCTAAAGCGTTGAATCCTGTTTCGATTGAATCCTTTAGActtatttttaaaggatttatATAAGCAgctatatttcattttttgaatatatttgttgCTGTGCAACTGTTAAATACAAAGATCCAAAATCCACTCGTATAGAAGACAATCATTTTTACGACGGTTCATCAGGGGACAGAGCTAAATTGAagcaaagcagagaaaaaaCCTGACAACCCAATCAAGCATCTCTgggattttatatattgtattatcatgatcaatatcattattatcattattattactagcatttttattattcatcaaCTTCATAATAAATCCCAATCTGTGAAGTTTGTGAGACACCGTTTTGCCTACCTAGGTACCTGCAGTTTTATACAGGTATCCTTCGCTATTATAGAGATGTATTCCAGTTAAAACCACTTTAACAAAAGACTGTGAATCCAGTGGGAGAAGTTTTGTGCGTTTAGGACAGTCTTTTGTAGTATTTTTGTAGAGTTCAGTCCGTCGGATTACAAATACACAAGGTTTACAACTTCCAGATTGTATTGAACGAGCGGCCTTCTTTCTTTCGTGTTTGTGAGAAGATTTTTGCACAGATGTTTTGtatggcaaaaa

Function

NR:

description
PREDICTED: protocadherin alpha-C2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU183949 True 1368 lncRNA 0.36 1 19218391 19219758
TU183950 False 1335 lncRNA 0.36 1 19218424 19219758

Neighbor

gene id symbol gene type direction distance location
AMCG00005225 NA coding downstream 2252 19207738 ~ 19216139 (-)
AMCG00005224 cachd1,LOC106584031 coding downstream 16979 19151990 ~ 19201412 (-)
AMCG00005218 NA coding downstream 71564 19120164 ~ 19146827 (-)
AMCG00005213 NA coding downstream 137788 19072155 ~ 19080603 (-)
AMCG00005215 dnajc6 coding downstream 151284 19052978 ~ 19067107 (-)
AMCG00005223 NA coding upstream 68 19219826 ~ 19226999 (-)
AMCG00005226 NA coding upstream 23941 19243699 ~ 19244617 (-)
AMCG00005219 pgm1,LOC106568718,LOC107731639,LOC107704513,LOC107591179,LOC107739071 coding upstream 96997 19316755 ~ 19330003 (-)
AMCG00005221 NA coding upstream 112483 19332241 ~ 19340709 (-)
AMCG00005220 NA coding upstream 129814 19349572 ~ 19359668 (-)
G146189 NA non-coding downstream 132350 19083995 ~ 19086041 (-)
G146023 NA non-coding downstream 866259 18351867 ~ 18352132 (-)
G146022 NA non-coding downstream 920288 18297847 ~ 18298103 (-)
G145995 NA non-coding downstream 1192717 18024765 ~ 18025674 (-)
G145760 NA non-coding downstream 2253317 16964203 ~ 16965074 (-)
G146257 NA non-coding upstream 244249 19464007 ~ 19464975 (-)
G146315 NA non-coding upstream 391008 19610766 ~ 19611005 (-)
G146322 NA non-coding upstream 484246 19704004 ~ 19732117 (-)
G146347 NA non-coding upstream 534438 19754196 ~ 19754744 (-)
G146348 NA non-coding upstream 536489 19756247 ~ 19757237 (-)
AMCG00005214 NA other downstream 193930 19013077 ~ 19024461 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 454093 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 1672059 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 3239536 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 3683246 15503082 ~ 15535145 (-)
G146313 NA other upstream 350301 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 538474 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 779409 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 883868 20103626 ~ 20107827 (-)
G146532 NA other upstream 1054633 20274391 ~ 20279746 (-)

Expression


Co-expression Network