G146348


Basic Information

Item Value
gene id G146348
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19756247 ~ 19757237 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU184124
NNNNNNACGCGAAAGGCGGCAAGAAATTTGGGAAAGGAGGGAAGCAGAATAAGAGACCTGGCAAGGACACCCGGAGGAAGATGAAGAATCGCTCTCGATAGGTACAGTCCGGAGGAGAGCAACCTCTGCGGTCAAACTGGGGTCTCTGAAGTCTGggtcatttgttttgtttttgtttttgtctgtacCGTTTCCGGCTCCAGTTTCTGGGCTGAGAGAACTCCTGCCAAGTCAGTTTTTGGCTCCTTTCCCCCTGCGCAACACCCCAGACAAGTGGGTTGATATCTCTGGACCTTTTTTCAGCCCAGTCCCCTGAGCCAGCTGCAGAATGGTGTCGCTAAGCAAGGGCTCGGAATAGCTGCCTGACCTGCGTCTGGGGCAGCTCTGGCACATGTCAGTGTGTTTTCTTGGGCATCCAGGGAGACTGTCCGCACAGACGCTCGGTGGCTTTGACTCGGAGTCATGTTGGCGAAACCTTTTAATTTTCTCTCCAAAGCAAGCAGGACAGCAGCCTCTGGACAGTCGCACACATGACTGGACTAAATAATAAACACGTGGTGAATTTGGTTGAACTGCACTTGGCTTGTTCTTGAGAATATGAGGatctggttaaaaaataaaacctgaatttGACTTAAATTCATGAATAATTTGTGCTTGGGCTTTccgatttgttatttttcttactgATAGACTTTACAGGACTAATGAAAATGGCATGCATTGTCACATGACCTCCCGACAAATGCCTGTGCCAGGAGTTTTGTGTCCCTTTGTATATATATCGCTAGTATCcaaaataaatgcctttttatt

Function

GO:

id name namespace
GO:0046116 queuosine metabolic process biological_process
GO:0008616 queuosine biosynthetic process biological_process

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03030 DNA replication
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU184124 True 816 lncRNA 0.47 2 19756247 19757237

Neighbor

gene id symbol gene type direction distance location
AMCG00005241 NA coding downstream 14882 19726944 ~ 19741365 (-)
AMCG00005229 NA coding downstream 87195 19664101 ~ 19669052 (-)
AMCG00005230 NA coding downstream 128611 19623255 ~ 19627636 (-)
AMCG00005228 NA coding downstream 155964 19575236 ~ 19600283 (-)
AMCG00005233 NA coding downstream 226565 19523812 ~ 19529682 (-)
AMCG00005250 LOC103463064,LOC103355575,LOC104919037,LOC103137203,LOC101157045 coding upstream 27637 19784874 ~ 19799356 (-)
AMCG00005249 NA coding upstream 42497 19799734 ~ 19805056 (-)
AMCG00005251 orc1 coding upstream 89554 19846791 ~ 19855209 (-)
AMCG00005252 NA coding upstream 100621 19857858 ~ 19878152 (-)
AMCG00005243 LOC107737066,LOC107384472 coding upstream 149849 19907086 ~ 19916367 (-)
G146347 NA non-coding downstream 1503 19754196 ~ 19754744 (-)
G146322 NA non-coding downstream 24130 19704004 ~ 19732117 (-)
G146315 NA non-coding downstream 145242 19610766 ~ 19611005 (-)
G146257 NA non-coding downstream 291272 19464007 ~ 19464975 (-)
G146227 NA non-coding downstream 536489 19218391 ~ 19219758 (-)
G146358 NA non-coding upstream 14535 19771772 ~ 19774991 (-)
G146461 NA non-coding upstream 292879 20050116 ~ 20052921 (-)
G146469 NA non-coding upstream 305312 20062549 ~ 20063413 (-)
G146487 NA non-coding upstream 350888 20108125 ~ 20109530 (-)
G146503 NA non-coding upstream 388848 20146085 ~ 20147354 (-)
G146313 NA other downstream 182929 19570059 ~ 19573318 (-)
AMCG00005214 NA other downstream 731786 19013077 ~ 19024461 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 991949 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 2209915 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 3777392 15958704 ~ 15978855 (-)
AMCG00005240 NA other upstream 995 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 241930 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 346389 20103626 ~ 20107827 (-)
G146532 NA other upstream 517154 20274391 ~ 20279746 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other upstream 558823 20316060 ~ 20339165 (-)

Expression


Co-expression Network