G146469


Basic Information

Item Value
gene id G146469
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20062549 ~ 20063413 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU184270
TGAAGGACCGAGCGCGTTGTCCGTTAGTAACTGTGATATTTATTCAGGTAAAGCAGTGcttgatacaaaacaaaataaactgtgttaAACAAATCAACTTGTAATTCAAAACGAGGCTCTTGGGAGTATAGAGAGTCCCGAGGGGGGTGGCGAGGCGGGACAGAGCCGGTAGGGCAAATTAAATCTCCGAGGACCAGAAAGCGCAGGAGGTGTGATTCACAGTTTGGATTCTCAACCATGAAGGAAGAGTTTgattcaaagagagagagagagtgtgagagagaggcagggaaagAAGGGATCATTTATACTCCTGAATACTGAATCAAAATCGCTGAAAGGTAGAGATGGATGAGTCTTGGGCTATTTCTactcagagaaagagagaccgAAACAGCCCAATTCACTTAGTTCCTGAAATGCTTAAAAATCACTGGTTGCTTTGATCTGTATTGCATTTTCTGGTCCAGAATTTAGAATGTGGTGACCAATCACAGCCAGGGCCCATACACCCGTGACCAATCACAGCCAGGGCCCATACACCCGTGACCAAGCACAGCCAGGGCTACAGGATTCTATAGAAAAGCAGGAATTGAAGCACTGGGTGTGAAACCCACTATCTTAGCCACTTCTGGACCCAATAAAAACTAGTTACGGTCCGATTGCGTGTAGGAATATGCGTACAATTAAGTAGTGTATTTCTCCTCAGCAGCCTTCTGAGGGAAGCACGGAGAAACGCCTAGAACTGGCAGTCCACGTCGCCCATCTCCACGATGACGGTCTTCAGCTGGGAGTAATACTCGATGGTCACCGTGCCGTTCTCCCGGCCgaagc

Function

NR:

description
PREDICTED: vitronectin-like

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU184270 True 834 lncRNA 0.47 2 20062549 20063413

Neighbor

gene id symbol gene type direction distance location
AMCG00005258 uck2,LOC106584056,LOC105005905,LOC106560433,LOC107731246,LOC107668082 coding downstream 19206 20030569 ~ 20043343 (-)
AMCG00005259 NA coding downstream 35844 20024174 ~ 20026705 (-)
AMCG00005257 NA coding downstream 67885 19981534 ~ 19994664 (-)
AMCG00005243 LOC107737066,LOC107384472 coding downstream 146182 19907086 ~ 19916367 (-)
AMCG00005252 NA coding downstream 184397 19857858 ~ 19878152 (-)
AMCG00005268 NA coding upstream 57367 20120780 ~ 20126843 (-)
AMCG00005264 prdx1,tdx,LOC108267618,LOC108430734,LOC105891340,LOC106600402 coding upstream 63746 20127159 ~ 20131739 (-)
AMCG00005269 NA coding upstream 83999 20147412 ~ 20159101 (-)
AMCG00005267 LOC106560440 coding upstream 99938 20163351 ~ 20174057 (-)
AMCG00005265 ipp coding upstream 112084 20175497 ~ 20180979 (-)
G146461 NA non-coding downstream 9628 20050116 ~ 20052921 (-)
G146358 NA non-coding downstream 287558 19771772 ~ 19774991 (-)
G146348 NA non-coding downstream 305312 19756247 ~ 19757237 (-)
G146347 NA non-coding downstream 307805 19754196 ~ 19754744 (-)
G146322 NA non-coding downstream 330432 19704004 ~ 19732117 (-)
G146487 NA non-coding upstream 44712 20108125 ~ 20109530 (-)
G146503 NA non-coding upstream 82672 20146085 ~ 20147354 (-)
G146576 NA non-coding upstream 458236 20521649 ~ 20523818 (-)
G146578 NA non-coding upstream 470955 20534368 ~ 20535200 (-)
G146607 NA non-coding upstream 535826 20599239 ~ 20599503 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other downstream 39042 19999167 ~ 20023507 (-)
AMCG00005240 NA other downstream 301103 19758232 ~ 19761446 (-)
G146313 NA other downstream 489231 19570059 ~ 19573318 (-)
AMCG00005214 NA other downstream 1038088 19013077 ~ 19024461 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 1298251 18741884 ~ 18764298 (-)
AMCG00005263 NA other upstream 40213 20103626 ~ 20107827 (-)
G146532 NA other upstream 210978 20274391 ~ 20279746 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other upstream 252647 20316060 ~ 20339165 (-)
AMCG00005276 pomgnt1 other upstream 427638 20491051 ~ 20502206 (-)
G146618 NA other upstream 545941 20609354 ~ 20610643 (-)

Expression


Co-expression Network