G146503


Basic Information

Item Value
gene id G146503
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20146085 ~ 20147354 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU184317
CCGTGCCATTATTCTCCTTTGAGAAGAAATTAGGAGGTTCTACCTTTTGCAAATAgtctttattgaaatgtactacaattttacaaaaagaaaaaaaaagttgaacatGGGGAAGAAACACTATTTACAGAAGAAATAACAGTAAGAGCTGCGAGGTGAGGGAGCGTGCTGGTGGGGAGGGGAGTCACAGAACTGCCATCTTCAGGGGGGTCCATCACGCCGAGCTCTCCACGGGGGCGGTGGGCTTCTCGGGCTGTGGGGGGGGCAACGAGGAGAGAGGGGTTGAGCTTCAGCCAGATTTTAAACCCAGAGAATGAAGTTCaaacatgcattaaaaatacaatcctTCCAATAGAGGGGGAGAAGGGACATTTTTCAATCATGCAACAGCAACCCTCTCCCCCAGGCCAGACCAAAGCTTCCTTCTCCAAAACCAAGTGCCACAAGCACTCGCACCAAGACACCGCTCCTCTCCACACAGCCGTTGTACACAAAAATCGCCTGAACCTCAAGCCAAAATGGGCGCCCATCCTACAAGCCACCAGCACTCGCCTCTTCCTGCTCCATTTTCTCCTCAACGCCATTGCGGTTGCCGGCAGACTCCCCGCTGCCATTAACCGCGGACTCCTGTTTGGGCTTTTTAGCGTCACTGTCCTTTAACGGGCTCTGCTCCTCGGGTTTCCTCTTCCTGACCAGGTGGGAGATGTCAGAGGCCGACTTGGAGGAAGACGCGGCTTCTGCTGGTTTCACTGGGATCTGAAACACAGTGGGACCATTTCAAACGTCatgaacctctg

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
TU184317 True 797 lncRNA 0.51 2 20146085 20147354

Neighbor

gene id symbol gene type direction distance location
AMCG00005264 prdx1,tdx,LOC108267618,LOC108430734,LOC105891340,LOC106600402 coding downstream 14346 20127159 ~ 20131739 (-)
AMCG00005268 NA coding downstream 19242 20120780 ~ 20126843 (-)
AMCG00005258 uck2,LOC106584056,LOC105005905,LOC106560433,LOC107731246,LOC107668082 coding downstream 102742 20030569 ~ 20043343 (-)
AMCG00005259 NA coding downstream 119380 20024174 ~ 20026705 (-)
AMCG00005257 NA coding downstream 151421 19981534 ~ 19994664 (-)
AMCG00005269 NA coding upstream 58 20147412 ~ 20159101 (-)
AMCG00005267 LOC106560440 coding upstream 15997 20163351 ~ 20174057 (-)
AMCG00005265 ipp coding upstream 28143 20175497 ~ 20180979 (-)
AMCG00005266 NA coding upstream 35026 20182380 ~ 20186437 (-)
AMCG00005271 NA coding upstream 223314 20370668 ~ 20391561 (-)
G146487 NA non-coding downstream 36555 20108125 ~ 20109530 (-)
G146469 NA non-coding downstream 82672 20062549 ~ 20063413 (-)
G146461 NA non-coding downstream 93164 20050116 ~ 20052921 (-)
G146358 NA non-coding downstream 371094 19771772 ~ 19774991 (-)
G146348 NA non-coding downstream 388848 19756247 ~ 19757237 (-)
G146576 NA non-coding upstream 374295 20521649 ~ 20523818 (-)
G146578 NA non-coding upstream 387014 20534368 ~ 20535200 (-)
G146607 NA non-coding upstream 451885 20599239 ~ 20599503 (-)
G146609 NA non-coding upstream 452820 20600174 ~ 20600514 (-)
G146623 NA non-coding upstream 486770 20634124 ~ 20636209 (-)
AMCG00005263 NA other downstream 38258 20103626 ~ 20107827 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other downstream 122578 19999167 ~ 20023507 (-)
AMCG00005240 NA other downstream 384639 19758232 ~ 19761446 (-)
G146313 NA other downstream 572767 19570059 ~ 19573318 (-)
AMCG00005214 NA other downstream 1121624 19013077 ~ 19024461 (-)
G146532 NA other upstream 127037 20274391 ~ 20279746 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other upstream 168706 20316060 ~ 20339165 (-)
AMCG00005276 pomgnt1 other upstream 343697 20491051 ~ 20502206 (-)
G146618 NA other upstream 462000 20609354 ~ 20610643 (-)
AMCG00005333 NA other upstream 1338595 21485949 ~ 21487711 (-)

Expression


Co-expression Network