G146544


Basic Information

Item Value
gene id G146544
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20316007 ~ 20333122 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU184369
CACaattgaacaaaatatttttctttattctgcAAGAGAAATGAGTATTGTGGAGTTTTGTCAATGTTATACATGAGTTTATCCCATAACAAATGGAGATTTCTACAACCAATACAAACTATTGCAACAGATACAAGAAAAAATTTGTACTGtgatgaaaaatgtaactgaatgatACCTAGAAGCCTGAAGCAATTATTGTTGCGATACTGAGAAAGAGGCCGTATGTacgaaggaaggaaggaaacgCAATAACAACGCAATAACAAAACGGGGTCTGTAATATCCTGTACAACAACAACGACCAATCGGCGGATTGTAAGTCGGACACAGGCAGGGCTTTCCAGGAGAGCAAAGGACAGACGTAGCGTGAACTTCAAACTCACCGAGTGAAGATGGAAGCACATTTGCATGAGACTGAGATTTTAGTCTCCTTGTGTCACCAGTTACTTTTGTCCACAGATGGACTGTAAGAGCCAATGTGTTATTgcttatactgtattttaaataatccaaTCTAATGTGATCagacaaatacagtacaaagtCATGTCATTGGCCTAATTAAGTTTCCGGAGCAGGCCTTGAAATGACCTGAATAAGGTGCAACAaagaacagcatttttttaattgaatattcaACGAAGCCAATCActatgataaaacatttaaagcaggaagttttgaaatgtatttttttttttttttggtgtgtacAGCTTTAAATATGCATTGGCAAAggatttggtttatttattaaaagaaaatgtagggAAAGTGAAACAATTACAACCAAACAGTCTGTATTGCTCTGGTCAATAGCCTCTTTCTcagtatatatctttttttttttttttttttttttaattttgtatatatgttaatCTTTTTTAAAACCACTACAGTTGTACAGGGTCCTAAATTGCTGCAGCGTTAAGCAGTGCCTTGTATTCTCAGCTATATTAAATTCAGTTTGTATACACCATTAACagacaaataacttttttttttttttccacaaaaaaacaacagtcaaGAGTACCAAAGATGCATGCTGGGTTTTTGTAAATATGTCaaaaggggggaagaaaaatggTGAGCCAgggttttctttcattaaagaTGCAGTATCCCTTTAGTAAGCTGTGGCCAGGACTCTGTGCAAGCCAGCAGTCatatgaacagaagaaaaagattCCTGGTGAAATATTCAACATATTAAACCCAACTGCAAATAAAACTTTGCAGGGCTATGTGGGGAAAACTGaaaatttcaaaattaatttccctCAATCAGACCGCTCTAGCTGCAGTTCGGGATCGGCCAAACTCTGGCCGTCCGGAGCTTCGGCTTAGTCTTTTAAAGAGAAACCACTCGGGGAAAGATGTCAACATGAACTATATTCTTTTGGTCTATCCACCATCAATCATTTTCCACCCAAATTATGCAAGGTTTGCTCGGCTTGGTTTCGTCTTTTCCTCAGGTGATAAAAAGCAACAGCATTCATTCACGGATTTAGCCAGTTTCTTGGTTGAACCACAAGCAATGCTCTTTTGACCCTGGAAATGCGAACAGACAAAAGGATATTGcgttgtttggttttgttttcatctgtagTGAAAGAACCAAGAACCCACAGATCAGTACAAATCGTAGCGCTTTCTGCCCTGCAGAGAACGACAATCACTTTGTGAGAGACGAGCCCAAGTACCCGGGGACAGAGGACTTTAGGCATTTAAAATGGAGAAAGACATTTGCACCAGCTCGTGTGCAAATACAATACTGActaaactgaagaaaacaaatgcatatattggttaaaaaacaaaaaaacaaaacaaaacaaaaaaaacgctCTGCCGGTGAACCAAGTGTTGGTTGTGTCACAGAAACACTGATATAAAAGTGACAAGAAaattcagaaaagaaaactcaaaatacaaaaacacattcgtTACATCCTTCTTGCCTGCACAGTTACAAGGTTAAAAGCATTCAGAAAAGCGCAGCCTTCAGTTAAATCTGAGAAAAGTGtctgttaaacaaaacacagacatcgTTCCTCATCTAAAGCACAGATATGGATGACCACCCCGTCCATGCTGGCATTTCCCAACACCATTTAAAATCGGGTTTAACTGAAGTGGCAACCCAACTACAGGATTTATCAAAAAGgcattcagaaaaacaaagcacGTCCGCTTTTTATTGTAAGAACCTTTTCAAGAATATCCCTCAAACTATCGGtctcaaattaaattcaacttAAATCTTTGGTCTCAATGCcagaacaaaagcaaaaaaaacacaaaaccctcCTTCAAACCATCATTTGGGATCTAAACCAAAGTGTAGTGTCGGTCTTATCTCCGCTAACGTGACCATTTGACACGCGAACCGTGTTAAAATTAAACGCAAAACAAAACGTTGCTTTTAAGAATGACCAATGCTCTAAAACGGACCGTTTCGTCTGTTGAGCCAGAAGAATTGAAAAATCccatgggatttttttttttttttttttttttttaaatatatacacacacacacacacacacacacaccagacatTTAAATCCCATCTTGTGTACCATATCATCAGAAAAGGATTTTATATACCTGTATATATGCAtcataaaaacattcaacagtGAGCAATAATAGTTCAAGTAATAGAAACAGGCCCGTTTAAGTCCTGATTAGTTCCTCACACAACTTGTGGGGGAATGGGGATCAACTCAAATAAAGTCATGGATTTACAGTTTATAGACTGGAGCACAACAGCCGAGGAAAGCGCGGTCGAGCCGTTCCCTCAGTCAGTCCGGACATGCTGGCTTGGTGTGAGAGGGCTGGGTGAGGTTTATGGGCCAGAGGCGGCTTAGGCATCTCTCCcctccaaaaaagaaaaaacaaattgtgcagAGGGGGTGGCCCTACAACCTTAGCAAAAATGTACATACTTGTGATGTGGAAgagagcaaaaaaaacaaaaacagattaagAATGTACCATCTTaaccaaaaaaaattaaataaaaacgcCAGGAAGCGAGAGATTTTCCCGTATAAGAGATTCTGACCAGAGACGCAGCCTTGTGGAAAGGGCCGGACTGGGGCTGAACCGCAAGACCAGTCATCAGGTACAGCAAGTGtctttgcaatttaaaaaataaaataaaaatggattaaaaatcttaaatgcATCAAATATTCATAGGCTTCACTTTCATAGCCTAGCTTATTCCAGGATGTTCAGAGATGCGTTTAAACAAATTGAATCCAGACTACCAGCACAAAACGACTGCCTGTGGTTAAAACGTCAGCAAAGCACACAAACTATACCCTGAATGCACTGATTTCAGATGCTTGCAGAGGCCACTGAAGTGTGACGAAAGCAGACCCCTAAAAGAACGTCTGTCCGCATCCCACCGTACATTCAAGAGACGTCCGCTTATCCCCGCGATTTAAAACCCAAAGCGGAAACTAACTATTCTGTTGACAAGACTAAGACCTAGACCTCGCAGCACAAGAACATTCAAGAACCCAAGAACCAGCTGGGGACGTGGGGGTTAAACCGCTGCACTCTCTCTGAACAGGCCCCCGCATCGGCCCGGACTCTCGCAGTGCCCAGCGTCTCCACTCGTATCGTTTCAATAGTGCAGTATGCCATGGGGCAgggagaaaagggggaaaaaaaaaaaaagaagtataAGTTGATGCTCTGTATAACAAACCTTTGCATCAGATACATCCGTGCAGCTTCCCAAACTCAGGTTTGCCTGGAGGCAAATCAGTGCGTTTGGATGGTTTGGGTTTCCAGGCTGTCGGCTAACTGCTTTATGGGGAACGGTTCATCTGTCTCAGCCTGGGAGTCATCAGAACTGAACCCTGAAGGACAGATCCAGCTCTAGGCATTGCTTTAGATCCCCCTCTACCTAAAAACTCCTGGTTATGAGCAGCCACAGACAGGATATGGCCTACCCCCCCTATTCACTGGCTATTTTACCTCCatactttgtatttattcagtgtgtgtacgtgtgtggaGGGGGAAGGGTGTTAATCAATGCCTGACTTTGTAACCAGTCTGCAAAGTATACAATTACAATCCTCCTTTTTGCAGGCCTGTTTTATACAGACACCACAGGAGAAGTTAACATCACACAATGGCCACGTAAAGAGCACCACAGGGACTGTAGAGATTTGCAGTTTACCTGGATTAGCACTAATGATTATCTCAAGACAGAACTTTATAAACTGCAgacacacccccccccccccaaaaaaaaaaaaaaaaacctgcaaccTTAAGGCTTCTGGGTAAATCAGTGAGAGTGACTACCTGGATTAGATTCACCCCCACCTTTTCCTTCTCAAATAACACGCATTAAAAGCAGCCAATTGGCATGAAGAGAACCCATAATAATCCGGTGTATTGGGAAGGCCGAGCCAATAGTTTAAGCCTGAATGGGAAGCGGTTTAAAAATCTTTTACCGCAAACCCGGCTGCTGCGTTGGCCCATTTGTAATGGAATAACCTTGAGTTGTACCATTGCCACAACAGTggttaaaatgtatagaaaaggGGTCAGCTAGGGGTTCGGTGGAGCGCAGTGACGCTGTCGAGGAATTTTGTTGCCCATCCTCTTTGCAAATATCAATCAAACCTGGCAAAAAGCGATAGGATCCTGCAAGAAAGTCTCTAAATAGCCATTGTGAATGTAAAACTTTTAGTTTATTAATGCGACTTAAAAATCCCAAACAGGCAGCCAATGAGATGACTGGTTATAAAGTCAAGCACCATAAATAGGACCAGTATAAAAATCAGTTTTCTTCAAGGGTATATTGtgcatttgaattttttttatttgtttcggCCTTGTCTGTGCGACTGACCAGGGGATACTGCAGCTGTATATCCCACCAATAAATATCGGATTGCACTTCCTTCCATTCATATttgctaaaacattttttgactCTTAAACGCAAAACTGCTGTACCTGCTTAATCGTTCAAAGCTTATTAAAGTTCCATAAAAGAACAATCGCATATAACATCCCAATGTTAAAACGGACCGCTTATATTttccaccacacacacaaaacaaagggGTTTcagggttttttgttttccaaaatttGGTGTTGAAATGTGCAGCTGtagacattttactttttaaataagtgCTTCAAACTGAATTTCAGTGGGTACAATTTGGTTCAGAATACACTTTTGGAGCTTTAGTGTTATACAAGAGCGAACCCAAACGGTTTTCATGTGTGGCACAAAACAAAGCATCTTTGAGtttactttttcttctcttaATTCATTAAGTGGAGTTTCTCCAAGGCTAACTTTGGTCGGTTTCTACGGgacagaaacttttttttctgctttgtagGAAAACTAGCCAGTTCTGGAAGTCCAGCCAAACTAAAAGCCTGAAAACTAAAGTaaaacataccaaaaaaaacaaaaacaaaaaaacctccTGTGGCTTGAGTCCTTACAGTTTAAAAAGCGAGCTCTTCTTTAAGACTACAAAACTTCTTCCCCCGCTGCAGTCCGGCAGCGTCTCGGATGACAACCGGCACATTTCTGCGATGGTTTGCTACattccctgcccccccccaccccacccctcttAACATGGAGGGAAAAACAATTACTTCCATTTCTGGTTCCTTTCATTTAGACCAAAGGAaggatggagaaaaaaaatgggggaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU184369 True 5740 lncRNA 0.40 2 20316007 20333122

Neighbor

gene id symbol gene type direction distance location
AMCG00005273 mast2 coding upstream 106550 20208791 ~ 20209457 (+)
AMCG00005260 NA coding upstream 140676 20172733 ~ 20175331 (+)
AMCG00005261 nasp,LOC107551040,LOC107731628 coding upstream 167723 20141222 ~ 20148284 (+)
AMCG00005262 akr1a1,akr1a1b,LOC107725198 coding upstream 176059 20129229 ~ 20139948 (+)
AMCG00005255 aldh9a1a.1,LOC102301203,LOC106676834 coding upstream 252610 20051949 ~ 20063397 (+)
AMCG00005274 NA coding downstream 151810 20484932 ~ 20489664 (+)
AMCG00005278 NA coding downstream 256624 20589746 ~ 20595754 (+)
AMCG00005279 NA coding downstream 264621 20597743 ~ 20627931 (+)
AMCG00005287 si:ch211-121a2.4,LOC107687197,LOC107581514,LOC103033168,LOC108416079,LOC107712847 coding downstream 408056 20741178 ~ 20742301 (+)
AMCG00005288 NA coding downstream 430510 20763632 ~ 20768980 (+)
G146486 NA non-coding upstream 206466 20108102 ~ 20109541 (+)
G146450 NA non-coding upstream 289946 20024173 ~ 20026061 (+)
G146442 NA non-coding upstream 304872 20007416 ~ 20011135 (+)
G146350 NA non-coding upstream 555216 19760152 ~ 19760791 (+)
G146307 NA non-coding upstream 722913 19592750 ~ 19593094 (+)
G146590 NA non-coding downstream 309146 20642268 ~ 20655773 (+)
G146591 NA non-coding downstream 309650 20642772 ~ 20712220 (+)
G146599 NA non-coding downstream 349503 20682625 ~ 20738321 (+)
G146640 NA non-coding downstream 417182 20750304 ~ 20750938 (+)
G146701 NA non-coding downstream 522589 20855711 ~ 20855918 (+)
AMCG00005272 mast2 other upstream 36221 20253009 ~ 20279786 (+)
G146519 NA other upstream 131364 20182354 ~ 20184643 (+)
G146305 NA other upstream 736200 19579573 ~ 19579807 (+)
AMCG00005232 dock7 other upstream 785554 19475139 ~ 19530453 (+)
AMCG00005199 wdr78 other upstream 1494365 18815029 ~ 18821642 (+)
G146575 LOC103468264,LOC108238356,LOC106512499 other downstream 188527 20521649 ~ 20524819 (+)
G146596 NA other downstream 328804 20661926 ~ 20670169 (+)
AMCG00005286 NA other downstream 366364 20699486 ~ 20702472 (+)
AMCG00005280 NA other downstream 464336 20797458 ~ 20803197 (+)
G146790 NA other downstream 1004310 21337432 ~ 21340712 (+)

Expression


Co-expression Network