G146576


Basic Information

Item Value
gene id G146576
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20521649 ~ 20523818 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU184406
GACTGCTCTTGCCGTGTTGTCTGTCTGGTGCTTTAGGAATGTGATTTAAACCCCCCAGAGGCTGAAGACTGGTATCAGACGCCCAGTTTGAGTCACTGTTCCCAGGTTCTGCAGTTCGTTTGCTCTGAAGCCACGTCTCTGAATcgatgtgtttttaaaaaagtgtaGCTCGGTGCAGTCCATCACTGGGACAGTAATGCGATTTATGTGAAAAAGAATAACCTGTGATTTAATGTGTGCAGTAAAAACATTCTTCGACACCTCGATGCTTTATCCTAACAAATGTAATTCCTAATTGCTGTCTGACGGTCCCTGTGCAGCTCAGTGATGTCAGCTCAAGTGTagaaataatgtgaaatgtgctgaaactaaatattttatatttatatataaaagtgtttttccCCAAGCATTTGAGGCAGAACCCTGTGTTCAATATAACCTCCTGATGCTCCTCAAACACCTTGCTAATAAAGCCACATGATTCCAGTGAAATCTGTAATTACAAGCCTGTATGTGCCTACGACCTTTTCTGAGACAACCAGTCGATGTGTTGCGTTTAGTTAACGCACTGTGCCGCCACAGTGTGCTGTGTGAACGTCTACAGCATGCAATGACGACACGCACTCCCGCGGAGCTACACAATCACAGCCTTCCTGTGATGCCCTGTTCTCGCTGTGGATTAGCCGAGTTTATTCCTGATTCCAGTATCTCTCTGTGTCATCTACCACTTATTGTTTCGCATCAATCAGGCCGACCGTCTTTATGTCCTGGAGAGAGATGAGGAGATTCCTCTCGGTGCAGCCCGACTGCTACTCTTCACAGTCCCCACGaggattttaaattacattggcTGTTTCCACCCGTGCAGCGTTTTAGTGCAGAGACGCGGGGCCGTGCCAACAGACGTTAGGGCTGATCCGTGGATGTCAGGCGGAACTGTAAAACAAGCAATGCCATGTGAAAACAATCAAGCCGGACTCGGGGAGTCACCGATGCCAAAACTGAGCTGCGAAATATGCAAAAGTCATACAATTATGTTTGCAATATTTTACCCTTTCCCTTCCCTTCACTTTTAAACTCCCAGTTCATTGACCTTGCTGGTGAACCAGGAGGAGTAATAGTGAACAGACACACAACCACGCGGTAATCGGCACCAGCACTGTGTCAGCCTGTCAACCTGTTGGTTTGGCTGTAGCATCAAAAAACTCTAAATTTTCCCATTCGAGAAGAATGCGTAAGCGCTAATGACAAACCACAACAAGCAATCAACCACGTGTTAACTCCAAAGCTCTTAGATCCTGATCAAGATTAGTCTAGTTCCTTCATGCCAGGGTTTGAacataaaagttaaaaaaatccTTCCCTGTTTCTTAACCCGAGAGAGGCAGTTCTGATGCTCAGACAAAGAATCTCACAGCGTCGGCACATTTTGAGTGTGTTGTGGTGGGTGGCCATCTTGTGCCAAGTGCTTTTGTACCCCATGGACATGTTAGGCCGTGTGTGTGAGCCGTGGTGCTAAGTGTTGTGCTTCAAAGGTACTGGCAGCGTCGCAGCAGCCCGTCGCTGATGCAGGGCTGTGATTGGACGGCTGATGACCTCAGCTGATTCCAGAACTCCCATCTCCAGGCAGGGAATGGGCCAATGAGCAGCATGCACTCTTTTAGGAGagtgttgtgttttgcatttaacaGCCGCCCCCCCTCCCCGGGACTGTCAGCCTGAACCCCAGGGTTGGTCAAGTCACCTGATCATtaatgaaagaagaaagaaagttCAGTGCAGCTTCTACTTCTTTGACTTTTCTTTAACCATTCTTTCTTTGTGTGCAAGAGGAAGTGAGGCCGGGGGGGCTGACTTTACTTCCTCACTTGTTGCTCgtggttttttttattttcttcttcgaTCATCATGGTATTCGCCAAAATCTCAATGCGCTCTTGAAGGGGGTGGGAGAGAAGCCATTCTGAAACGAGACGAAATGAACGGGGTCTTGCTGCCAACTTAGGCTTCCTTTTGGTTTTAGAACACGGTTGTTTATAAATTAGTGGTTTGTGAATTGAATAGcagtatttttttgtaagaaaagtgtctctctgtatgtatgAAATATGCATTACTGTTCTGAATAACATATGCAATGTACATAATGCCTATAGCCTGCCTGTGg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU184406 True 2170 lncRNA 0.46 1 20521649 20523818

Neighbor

gene id symbol gene type direction distance location
AMCG00005271 NA coding downstream 130088 20370668 ~ 20391561 (-)
AMCG00005266 NA coding downstream 335212 20182380 ~ 20186437 (-)
AMCG00005265 ipp coding downstream 340670 20175497 ~ 20180979 (-)
AMCG00005267 LOC106560440 coding downstream 347592 20163351 ~ 20174057 (-)
AMCG00005269 NA coding downstream 362548 20147412 ~ 20159101 (-)
AMCG00005277 LOC103468264,LOC108238356,LOC106512499 coding upstream 228 20524046 ~ 20525301 (-)
AMCG00005275 NA coding upstream 18284 20542102 ~ 20547367 (-)
AMCG00005294 NA coding upstream 115840 20639658 ~ 20643224 (-)
AMCG00005295 NA coding upstream 123738 20647556 ~ 20677947 (-)
AMCG00005293 NA coding upstream 184968 20708786 ~ 20709969 (-)
G146503 NA non-coding downstream 374295 20146085 ~ 20147354 (-)
G146487 NA non-coding downstream 412119 20108125 ~ 20109530 (-)
G146469 NA non-coding downstream 458236 20062549 ~ 20063413 (-)
G146461 NA non-coding downstream 468728 20050116 ~ 20052921 (-)
G146358 NA non-coding downstream 746658 19771772 ~ 19774991 (-)
G146578 NA non-coding upstream 10550 20534368 ~ 20535200 (-)
G146607 NA non-coding upstream 75421 20599239 ~ 20599503 (-)
G146609 NA non-coding upstream 76356 20600174 ~ 20600514 (-)
G146623 NA non-coding upstream 110306 20634124 ~ 20636209 (-)
G146631 NA non-coding upstream 170997 20694815 ~ 20707606 (-)
AMCG00005276 pomgnt1 other downstream 19443 20491051 ~ 20502206 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other downstream 182484 20316060 ~ 20339165 (-)
G146532 NA other downstream 241903 20274391 ~ 20279746 (-)
AMCG00005263 NA other downstream 413822 20103626 ~ 20107827 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other downstream 498142 19999167 ~ 20023507 (-)
G146618 NA other upstream 85536 20609354 ~ 20610643 (-)
AMCG00005333 NA other upstream 962131 21485949 ~ 21487711 (-)
G146938 NA other upstream 1221058 21744876 ~ 21745453 (-)
AMCG00005343 NA other upstream 1221726 21745544 ~ 21747798 (-)
AMCG00005363 NA other upstream 1447217 21971035 ~ 21982521 (-)

Expression


Co-expression Network