AMCG00005390


Basic Information

Item Value
gene id AMCG00005390
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1083158 ~ 1090681 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005390
ATGGCCGTGGCGCTGTGCTGGCTGTGCGCCGGATCCCTCCTGCTCGCTGTGTCCGGCGGCACCGGCTTGGTTTACCAGTTTCCCGCGGTGGCGATTCAGCACCTGAGCCCGGAGCGCAGCGCCGGACCCCCCGCCAGCTCGGCGGCGCCCCGCAGAGCTGAGGAACCTCTTGCTTCTGCTGGGGGCGCTAATTACCTGGGCAAGAAGGAAAGAAACCAGGGCAGACAACAGCTAATGGGAGAAAAGGAAGAGCACAGTTACAGCGGGGGCCCAGAGGGGAACTGGTGCCAGTACACGGTGTCCAAGACCGTGAGCTGCCAGGTGCACAACGGCACGGAGACGCTGGTGCAGCGCGTGTTCCAGAGCTGCCGCTGGCCAGGACCCTGTGCCAACCTGCTCAGTTTGGTGGTGTTGCTCGGGCCTCCACACGCTGACGGGACGCACTGGTTAGGGGAACAGCTGCAGGGCTTGACTGGGGACACTGAGGATATTCATTTAAAGCTCCAGGTGTCTTCTGCAGCTGCCTCGAGTAACAGGAGACTCTACAGGACCCTGGTCAGACCCACCTACCGGGTGGCGTATCGGCAGGTGACGGTGCTGGAGTGGCGATGCTGCCCGGGCTTCCTGGGAGCCGACTGCAGTGAGGGCTTGGGCTACAGTGTGGCTCCTCTCTGTGAGGAACTGCACGGTGCCCGTCACCAGTCCTCTGACACGCTCTCCCGGTGTGGGACCGTGTTATGGGGGGTGCAGCCGCTCTGCCTGACTCCTCCTCCAGATAATTAG

Function

GO: NA

KEGG:

id description
K24358 COL26A, EMID2; collagen type XXVI alpha (EMI domain-containing protein 2)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005390 True 783 mRNA 0.63 6 1083158 1090681

Neighbor

gene id symbol gene type direction distance location
AMCG00005464 NA coding upstream 1740 1073052 ~ 1081418 (+)
AMCG00005466 NA coding upstream 10917 1063490 ~ 1072241 (+)
AMCG00005465 NA coding upstream 47127 1030879 ~ 1036031 (+)
AMCG00005467 NA coding upstream 52659 1027198 ~ 1030499 (+)
AMCG00005463 NA coding upstream 69765 1004963 ~ 1013393 (+)
AMCG00005410 NA coding downstream 123476 1214157 ~ 1244875 (+)
AMCG00005411 cux1,LOC105006988 coding downstream 164361 1255042 ~ 1258125 (+)
AMCG00005415 LOC107573094,LOC107551239 coding downstream 193606 1284287 ~ 1295448 (+)
AMCG00005414 wbscr22 coding downstream 210356 1301037 ~ 1305072 (+)
AMCG00005412 NA coding downstream 231127 1321808 ~ 1322595 (+)
G152053 NA non-coding upstream 25763 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 68778 1014078 ~ 1014380 (+)
G151978 NA non-coding upstream 392222 690659 ~ 690936 (+)
G151968 NA non-coding upstream 546466 535895 ~ 536692 (+)
G151964 NA non-coding upstream 722866 360093 ~ 360292 (+)
G152111 NA non-coding downstream 154350 1245031 ~ 1253959 (+)
G152196 NA non-coding downstream 367473 1458154 ~ 1458747 (+)
G152198 NA non-coding downstream 371043 1461724 ~ 1461939 (+)
G152397 NA non-coding downstream 1164684 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1981269 3071950 ~ 3090655 (+)
G151969 NA other upstream 545795 536751 ~ 537363 (+)
G151967 NA other upstream 683293 398925 ~ 399865 (+)
G152159 NA other downstream 276333 1367014 ~ 1367956 (+)
AMCG00005418 NA other downstream 285787 1376468 ~ 1379302 (+)
AMCG00005434 NA other downstream 418821 1509502 ~ 1517580 (+)
G152267 NA other downstream 655279 1745960 ~ 1748934 (+)
G152337 NA other downstream 709130 1799811 ~ 1803903 (+)

Expression


Co-expression Network