AMCG00005391


Basic Information

Item Value
gene id AMCG00005391
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 350765 ~ 375012 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005391
ATGCCTGCCGTGCCGAGGGAGGGTTGTGTGTTCGCGCGCCAGGAAGACCagcgtgtgagagtgtgtggaGGAGGAGCTCCTGTTAATCGCCCTGCGGTTGTGCCTTTCTTTTGCAGGGTGAAAGCCAAGAAAGGAGTCAATCTCCACAACACCGTCTCCCGCAGCGAGCAGTGGGCCTTCAAGTCGGAGGTGCTGACCGGATCCAAGCACTCCATCGCCACGGTGGACGTGAACAAGAACAAAGCGGTCCAGCTGGGCCAGTCGGTCACGCGCCGCATCAATTGGAACATCGATTACCGCGGCGCCAACCCGCCCCCCGACTCGGAGAAGGTGGTGACGGAGCTGACGGTGGTGCAGAGGGACATCCAGGCTATCATCCCCCTGTCCATGGACACTGAGATCATCAACACCGCAGTGCTGACCGGCCGGACGGTGGCCATCCCGGTGAAGGTCTTCTCCATCGAGATGAGTGGCTTGGTCACCGACGTCTCCACCTTTGCCGAGTGCAAGTCCACCAACGAAGACATCGTCAAGGTGTCCTCCAGCTGTGACTACGTGTTCGTGAACGGGAAGGAGACGCGGGGCTCCATGAACGCCAGGGTGGTGTTCAGCTACGAGCACCTGAGCGCCCCTCTGGAGCTGACTGTGTGGGTGCCCAAGCTGCCCCTGCAGGTGGAGCTGTCTGACAGCCGGCTCAGCCTCATCAAGGGCTGGAGGGTCCCCATCCTGCCCGACCGCAGGGACAgtgaggacgaggacgaggaggacCGCAAGCTGAGCCGCGGCTGCACCCTGCAGTACCAGCACTCACTGGTCCGAGTTCTCACCCAGTTCCACACCACCTCCACCGAGGGCACCGACCAGGTCATCACCATGCTGGGGCCCGACTGGCAGGTGGACGTGACGGAACTGGTCCAGGACTCGCTGAAGGTGGCCGACCCCCGCGTGGCCGAGCTGGTGGACAGGAGCGTGCTGGTCGGCCTGGAGCTGGGGACCACCACCCTGAAGGTGGAGTCCCCTCTGGCCATGGAGGTGGTGCTGGGCGAGGCCGCGGTCACCATCACCGACGACAAGGTTTCCATCTTAGACCTGCGGGTCCAGGCCATCGCCGGCCTCTCTCTGAGCCTGCAGCCCAGCCCCGGGAACAGCCACACCATGGTGGCCAAGGCAATGGGCCTGTCCACCCTCACGGCACCCAAACAGGTACGAACCGCAGACTCCGGTGGGAGGACCGGACCTGGGAACGGACTGCCCCCCCACGCGATCAACATGAAATTATCATCTCACCACTTCCGGTTCACAGAGGCATCTCTGTCCATCTGGATTTATTACAGCGACGGCACCGCGGCACCCCTGAGTCTCTACGACCCCAAGGACTACAACCTGAACGGCACAACTCTGGACGAAAAGGTGGTGATGGTGCTGCAGGACCCGCAGCTGCGCTGGCCGCTGGTGGTGGCTGAGGGCGAGGGCTCGGGCGAGATCGTCCGCGTGGAGATGACTATAGGCGAGGCGTGCCAGAAGACCAAGCGCAAGAGTGTCATCTTCGCCGCCCCCGTGTACGTCAAGGTCCGCTTCGGGCCCGAGGACGACTCTGATGAGGACGTGGACTACCCGGGCGGCCGCGGGAGCCAGGGCACGCTGCCGGGCCAAGGGGAGGCCGAGGAGGCGCCGGTCACCAGGAAGGCGGGGGTGGACTCCAAGCAGGGCGGAGGCAGTTACGAGGCCACCAACGAGCAGCCGGCCAGCGTGCCCATCGACTACACCAATTTCCCCACCATCGGCAACCCGGAGGGGCCCactgagggtgagggtgaggagGAGGACTTCGTGCACGCCCCCCGCAGCCTGACCGACCTGGAGATCGGCATGTACGCCCTGCTGGGGGTCTTCTGCCTGGCCATCCTGGTCTTCCTCATCAACTGCATCGTGTTCGTCCTCAAGTACCGGCACAAGCGCATCCCCCCCGAAGGCCAGGCCAACATGGACCACTCGCACCACTGGGTGTTCCTGGGCAATGGGCAGCCGCTGCGAGCGCAGAACGACCTGTCGCCCCAGCAGGTGGAGAGCCCCAGCAACCCCCTGGAGGGGGTACAGACTTGCTGCCACGGGGACCACCACAGCAGCGGCAGCTCCCAGACCAGCGTGCAGAGCCAGGTGCATGGCCGGGGGGACGGCAGCTCAGGGGGCTCCACCAAGGAGCACAGCGAGGAGCCCCTGAACTCGCCCACCTCCAAGCGCAAGCGCGTCAAGTTCACCACCTTCGCCACGCTGCCCACGGAGGACATGCCCTACAACTCCATCCCCATCGCCGACGAGGAGGACATTCAGTGGGTGTGCCAAGACATGGGCTTCCAGGACCCCGAGGAGCTGCACGACTACATGCGCAGGATAAAGGAGATCGCCTAG

Function

GO: NA

KEGG:

id description
K17599 TMEM132; transmembrane protein 132

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005391 True 2409 mRNA 0.64 8 350765 375012

Neighbor

gene id symbol gene type direction distance location
AMCG00005395 lig3,LOC102796838,LOC107587693,LOC105924869 coding downstream 83075 260508 ~ 267690 (-)
AMCG00005394 tmem248 coding downstream 99592 248099 ~ 251173 (-)
AMCG00005396 NA coding downstream 118390 227258 ~ 232375 (-)
AMCG00005401 doc2b,LOC107681901,LOC107685552 coding downstream 199651 148035 ~ 151114 (-)
AMCG00005398 NA coding downstream 244267 104130 ~ 106498 (-)
AMCG00005387 tmem132e coding upstream 23908 398920 ~ 400797 (-)
AMCG00005388 NA coding upstream 496145 871157 ~ 873005 (-)
AMCG00005454 NA coding upstream 596659 971671 ~ 973719 (-)
AMCG00005474 NA coding upstream 639640 1014652 ~ 1021117 (-)
AMCG00005476 mdh2,LOC106908802,LOC103136570 coding upstream 648023 1023035 ~ 1027249 (-)
G151970 NA non-coding downstream 443 346997 ~ 350322 (-)
G151957 NA non-coding downstream 18421 242154 ~ 332344 (-)
G151903 NA non-coding downstream 314370 35722 ~ 36395 (-)
G151901 NA non-coding downstream 317954 31994 ~ 32811 (-)
G151891 NA non-coding downstream 330209 20300 ~ 20556 (-)
G151972 NA non-coding upstream 2343 377355 ~ 377713 (-)
G151979 NA non-coding upstream 315647 690659 ~ 690942 (-)
G152071 NA non-coding upstream 623342 998354 ~ 1009739 (-)
G152085 NA non-coding upstream 690447 1065459 ~ 1070656 (-)
G152178 NA non-coding upstream 1022329 1397341 ~ 1398392 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other downstream 230218 108398 ~ 120547 (-)
AMCG00005399 NA other downstream 251095 94352 ~ 99670 (-)
AMCG00005407 polr2j,LOC107587688 other downstream 283732 62355 ~ 67033 (-)
G152133 NA other upstream 844315 1219327 ~ 1335440 (-)
AMCG00005419 NA other upstream 996330 1371342 ~ 1376473 (-)
G152277 NA other upstream 1130928 1505940 ~ 1507628 (-)
G152271 NA other upstream 1146730 1521742 ~ 1615497 (-)
AMCG00005461 eif4h other upstream 1333671 1708683 ~ 1723500 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031543 NA non-coding NC_007116.7 CM002889.2 60683832 ~ 60687861 (-)
grasscarp (Ctenopharyngodon idella) G253180 NA non-coding CI01000059 null 4039892 ~ 4043550 (-)