AMCG00005400 (doc2b,LOC105895337,LOC107681901)


Basic Information

Item Value
gene id AMCG00005400
gene name doc2b,LOC105895337,LOC107681901
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 108398 ~ 120547 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005400
ACCAGCAAGGAGTTCTTCAGCCCCGCGATTCAgtcctgtcagtcagtgtctctcagGGCCACGCCCACGCGCTGTGGACAGGACCGctctctcacccccccccccccccccccccccctctctttctctctccccccacagGGGCTCAAGCCGATGGACCACAATGGGCTGTCAGATCCCTATGTCAAGCTGCACTTGCTGCCCGGAGCCAGTAAGGCCAACAAGCTTCGGACGAAGACCCTCCGAAACACCCTGAACCCCGTGTGGAACGAGACGCTCACATACTATGGCATTACAGATGAGGACATGGTGGAACCTGTGACGGATGGGCCCCCTGACCCAGGCGGATGTCTCCTCTTGTCCCGGCAGATCGACAAGACAGACGACAAGTCGCTGGAGGAGCGCGGGCGCATAATGATCTCCCTGAAGTATAGCTCCCAGAAGGCCGGCCTGGTGGTGGGCATCATCCGCTGCGCCCACCTGGCCGCCATGGACGCCAATGGCTTCTCCGACCCCTACGAATTCTTCTATGACATCAAGCACGCTGACCTCACCAAGAAGACCCTAGAGGTCACAGTGTGGGACTACGACATCGGGAAGTCCAACGACTTCATAGGCGGCGTGTCTCTGGGGATCAACGCCCATGGGGACCGGCTGAAGCACTGGTTCGACTGCCTCAAAAATAAGGACAAGAAGATCGAGCGCTGGCACACGCTGACCAATGAACTGCCTGGCTCTGTGCTCAGCGAC
>TU191313
CAGCAGCGCCCCCTGCTGGAGGCTTGGAGAGGCACAGACAGGCAGCTCCAGGCCACGgtggtgtGTACCTGAAGCCCGACGAGAATAAGAAATCGAAGCACAAGACGACCGTGAAGAAGAAGACGCTGAACCCGGAGTTTAACGAGGAATTCTTCTATGACATCAAGCACGCTGACCTCACCAAGAAGACCCTAGAGGTCACAGTGTGGGACTACGACATCGGGAAGTCCAACGACTTCATAGGCGGCGTGTCTCTGGGGATCAACGCCCATGGGGACCGGCTGAAGCACTGGTTCGACTGCCTCAAAAATAAGGACAAGAAGATCGAGCGCTGGCACACGCTGACCAATGAACTGCCTGGCTCTGTGCTCAGCGACTGAGGCCCCACCCCTCCTGGACTGGCAGCAGCTCGGCCTGTGGTTCCCTCAGCTCCATCGCCCTGCTCTGTGAGGGAGATGCGGACCCCTGccctctcacactctctcccccgactcactcactcacagggTGTAAGGGAGTCCCCTTGTGACTCCCATGTTGTAACACATGCAGGTCAGGCCACTGGGCCCAGCGTCTGTGTCTCGCTTCTTGTGGCGGATGTGTGGTGCCTCTGAATGTAAAGTGACGCACAACCCGGCccagcctccctctctccctgagGACTCCCCCGTCTTCCACTGtcagtgtttgtctgtttatctaTTCTTGTttaagttgtttgtttgtttgctggttGGTTGGTGGGTTTGTCACATGGAAACGAAAGGGAGCACCTGTGGGATCTGCTGACTTCCATCGCCATCAGCGTTTCCAGAGAAGCTGGGCTGAGAGGCCCTTGTCTTGGGCTCTCCTGCATTTCAACGAGCGCAGAGACAAGCGactgaattggaatttgtaatacacacacgcacacacatatatatgtatatttacacacacacacgtgtttaGTGTGAAacagtgtgtttttatggtTTCTGTCCTTCACATCCTCACCGCTCTGTCCGTCGCTGTCTCCATCAGCCCTGTCATTCTGATTTAAGCCCTCTCTGTTCATTGCATCACAgtgtctgctctctctctctttctctctctctctctctctctctctgtatatatatagtaattcTTTCAGtcattcaccccccccccctccgcaCACGTGTCCTGGAAGCTTCAGCCCCAGGCTGTGACACCGGCGCTCATCAGGGCGTTTATTTGCTCTGACATGAATTAACCCcggacacagagaggagacgCGGAGCTGGAGAACCGCAGAAAGTTCGATTTGTGGGAATATATGCGACGCTACTGATTTCCAGCCCCATGGCTGCCTGGCAGTGCCGCGCTCAGGACGACTGGTCTGTAGGCTAATCAATACCCTCTGGCTTGCAATATATCACATAAACTCGCTCAATAAAGGCCGTTCACCGACCAGGGAGAGGTTTGTGTGCAGACTGAGTGGTTCTCTCGGTGCAGAAGTGACGCGCTCTGTTCATCCGGTGTCGTCCAGACTAGTGCAACTGTGCTCGTGAGCCGACTGAGAGCAGATAACATCTATAGTGAGACCTCAGTGACCAGGTGAACCTGAGGAAGGAATGGAGATCATGttcaaaaattatatttatgaatgttttcaTCCTGTGAAAGAAACAGGGAAAACTCTGGTGGCTGAGCTGAGAGGCAGAACAtatgctctgtctctctctctcccttgatTTCCCATTTTATTTCCCAGTTCATCATGTGCCACCCGTTTCCTCTGTTTCACCTGCTCAGTCTCATAAGGGAGGGGGACAGAGAGCCTCAGGATCGCATATTGATCGATCAGCGCAGGGAGAGGGACGGTCGCATTAAAGCCCGCAGCCTGAGAGGAGGTGATTGATTCTCGCTCGGAGTTTAATTGCTCCGTGACATTAATTAACCCAGGACACGGGGAAGACACAGGGAGCTGTATAGTTGCAGATGGTTCAATATTTATTCATCTCTGATCTGAGTCACACCCAGTAGTCCCGGTGCACGGGGACAGACTCAGGCCGTTAGTGCTGCAGGACTGGGGCCTCCGTGTTCACTTTCTTCTCCTCTCATGGCCAACCAGACAGATTCGTACCTCTGCCGTCGTCTCCGCTCCCCCAGTCTCCCCAGGCACACAGGGATGTTTATTCAATCCATTTATTGAAGCCCCTTATcgttgtgattttattttcttctccgTAGAGTAGAAAGCAAAAGAGGAGGAATTGAGTGCGTGGTTTTCTCTCCAGTGCAAGAATCGATCTCTGTGAGTCGAGCACAGCATGTAAACTGACGCgctgtggggggggttgttgttgttgactcGGGGCCCCTCCTCCGGCCCTCACTGATGTTTTAAACAGAGTAGCCCTGGCCAGGCCTGGGGGCCCCTGTTATTCCCACCGCTCAGCTCCAGTCCCCTCCTGCACAGACCCTCACTGTGTCACCACACCTGGAGGACACAAAAACCCTGCCCCACGTGCTTCCTCCCCCTCCTTAGTGTGCTGAACCTAAGAGCGACCAGAAGGAGAGGAACAAGGCGGCCATTTGACCTTGTGCTCGCTAACGTTAGGATCCGAGTCCAGTCGTGTCCAGTCTGCCCGTTGAGCGATCCGGAGGAGTCGACAGCAGACTGGACACTTGAATCTGACACCCTGACCCCACTGTGTCGCGCTGTTCCCCAGCTCTCTGGTCAGACACTTTATTCACAGCCCTGTGCGTTGATGACGAGATCCTGTCCTCATGGGTAAGCGGCGTTCGCCAATTGCTTTCATGTTTCCTCCACAAAGGGCAGCTGTCccaatattgtgtgtgtggtataaagcagtgcagtgtttacagtgagtGGCCAGGGGCAGGGCATCCCCTCACTGGTCCCTCACCCCAGGGGCCGGGCATCCCCTCACTGGCTGTCAGGCCAGTCCCAAGGCGGGGTGTCCCACCCTGCCACACTTGTGAAATTTTTTTGCAATCTGTTTGCCTTTGTACTTGACTTCTATATTATAAGGAAATGCATGCAGATGTATCGGTTTGTCATGCAACAAATTTGCTAAATGTTTGatactgctgtttttttctgtgaaaaagaaaaaaaaaaagaaaaaaaaatctggacgCTACAGGAATGTCAGTCTTTTTCTTCACAGACAAACTTTTTGTACCTGAACGCTATCGCATTGCCTGTCAGACTGTCCTGTGGACTGGAGATGTGACTgca

Function

symbol description
doc2b Predicted to enable calcium ion binding activity and calcium-dependent phospholipid binding activity. Predicted to act upstream of or within chemical synaptic transmission; intracellular protein transport; and regulation of calcium ion-dependent exocytosis. Predicted to be located in membrane. Orthologous to human DOC2B (double C2 domain beta).

NR:

description
PREDICTED: double C2-like domain-containing protein beta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005400 False 750 mRNA 0.60 5 111253 120547
TU191313 True 3232 lncRNA 0.52 4 108398 112412

Neighbor

gene id symbol gene type direction distance location
AMCG00005398 NA coding downstream 1900 104130 ~ 106498 (-)
AMCG00005397 gatsl2,LOC106567563,LOC106603747 coding downstream 18015 80442 ~ 90383 (-)
AMCG00005406 NA coding downstream 47075 54208 ~ 61323 (-)
AMCG00005408 bckdk,LOC107681895,LOC107685622 coding downstream 54979 42629 ~ 53419 (-)
AMCG00005409 NA coding downstream 66125 41220 ~ 42273 (-)
AMCG00005401 doc2b,LOC107681901,LOC107685552 coding upstream 27488 148035 ~ 151114 (-)
AMCG00005396 NA coding upstream 106711 227258 ~ 232375 (-)
AMCG00005394 tmem248 coding upstream 127552 248099 ~ 251173 (-)
AMCG00005395 lig3,LOC102796838,LOC107587693,LOC105924869 coding upstream 139961 260508 ~ 267690 (-)
AMCG00005391 NA coding upstream 230218 350765 ~ 375012 (-)
G151903 NA non-coding downstream 72003 35722 ~ 36395 (-)
G151901 NA non-coding downstream 75587 31994 ~ 32811 (-)
G151891 NA non-coding downstream 87842 20300 ~ 20556 (-)
G151957 NA non-coding upstream 121607 242154 ~ 332344 (-)
G151970 NA non-coding upstream 226450 346997 ~ 350322 (-)
G151972 NA non-coding upstream 256808 377355 ~ 377713 (-)
G151979 NA non-coding upstream 570112 690659 ~ 690942 (-)
G152071 NA non-coding upstream 877807 998354 ~ 1009739 (-)
AMCG00005399 NA other downstream 8728 94352 ~ 99670 (-)
AMCG00005407 polr2j,LOC107587688 other downstream 41365 62355 ~ 67033 (-)
G152133 NA other upstream 1098780 1219327 ~ 1335440 (-)
AMCG00005419 NA other upstream 1250795 1371342 ~ 1376473 (-)
G152277 NA other upstream 1385393 1505940 ~ 1507628 (-)
G152271 NA other upstream 1401195 1521742 ~ 1615497 (-)
AMCG00005461 eif4h other upstream 1588136 1708683 ~ 1723500 (-)

Expression


Co-expression Network