AMCG00005401 (doc2b,LOC107681901,LOC107685552)


Basic Information

Item Value
gene id AMCG00005401
gene name doc2b,LOC107681901,LOC107685552
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 148035 ~ 151114 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005401
ATGCGGCCCGGCGCCCTGTGGGGTCTGGTGCCCTGTGGGGCCCGGCACTCTGTGGGGCCTGGCGCTCTGTGTTTCGTAACGACGACCAGATGTCCTGGCACGTTGTGTTGGGACCGGCTGGCTGCCTCTTCTCTGTACCAGCAGTGCGGAGCGATACGGCTTCACCGACTCAGTGACTCGgaggagaaaaaacacatcCGAGCGTCTGTTATTGAAACGTGTGTGTGTGGAGAGTGTGGAGGAGCTCGGAGCAGACGGCATGGTTACAGCGATTCGGAGCGCAGCGCGCCGTGTCTCCATGTAGCCGGGCTCGGCCAGCGCGTGGGGGTCAGcggagcagcagcagctcggAGACTCGGGGCCCGATCCTCCTGCCGACTCGTTTCTCTGTGGGTTCGGCTGAGTGGCGAAACGGTCGCATGCATGACACTCCGCAAAGGCGAGAAGACGACCATAAGCATCCAAGAGCACATGGCCATTGATGTCTGCCCCGGCCCCATCCAGCCCATCAAGCAGATCTCTGACTATTTCCCCCGCTTCCCGCGGGGTCTCCCCCCCACAGTGCCCCCCGCCCTCAGCCGCACCGGCTCCCTGCGCTCCTCCACCGGCCAGCTGTCCGGGGGCCTGCCGTCGGAGCCGTCCCGCGACGAGGACGACCTGGACCGGGCGCGTCGCTGTGTGAGCGACCGTGCTGCGgAAGCGGATCCTCCCGACACCGGGGACGAGGCGTTGGTGCCAAATGTGCCGCCCAGTCCCGGCAGGCCCGTGTCTGCGGAGTGCGCCAGCCGCCGGGCCGTGTCAGCGGTGCCGCGTGTGCCCATGGTGACGCAGCCGCCCGGGGACCGCAGGGCAGCCTGTTGTCTGGGGCTGATAGCTGTCACAGGCCGTGCACTGCCGGCAGTCAAAGAGCAGCCGTCACCGCGATCCGGGCCGCTGACAGGCCTGCCGCGGTGCTGA

Function

symbol description
doc2b Predicted to enable calcium ion binding activity and calcium-dependent phospholipid binding activity. Predicted to act upstream of or within chemical synaptic transmission; intracellular protein transport; and regulation of calcium ion-dependent exocytosis. Predicted to be located in membrane. Orthologous to human DOC2B (double C2 domain beta).

NR:

description
PREDICTED: double C2-like domain-containing protein beta isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005401 True 957 mRNA 0.67 6 148035 151114

Neighbor

gene id symbol gene type direction distance location
AMCG00005398 NA coding downstream 41537 104130 ~ 106498 (-)
AMCG00005397 gatsl2,LOC106567563,LOC106603747 coding downstream 57652 80442 ~ 90383 (-)
AMCG00005406 NA coding downstream 86712 54208 ~ 61323 (-)
AMCG00005408 bckdk,LOC107681895,LOC107685622 coding downstream 94616 42629 ~ 53419 (-)
AMCG00005409 NA coding downstream 105762 41220 ~ 42273 (-)
AMCG00005396 NA coding upstream 76144 227258 ~ 232375 (-)
AMCG00005394 tmem248 coding upstream 96985 248099 ~ 251173 (-)
AMCG00005395 lig3,LOC102796838,LOC107587693,LOC105924869 coding upstream 109394 260508 ~ 267690 (-)
AMCG00005391 NA coding upstream 199651 350765 ~ 375012 (-)
AMCG00005387 tmem132e coding upstream 247806 398920 ~ 400797 (-)
G151903 NA non-coding downstream 111640 35722 ~ 36395 (-)
G151901 NA non-coding downstream 115224 31994 ~ 32811 (-)
G151891 NA non-coding downstream 127479 20300 ~ 20556 (-)
G151957 NA non-coding upstream 91040 242154 ~ 332344 (-)
G151970 NA non-coding upstream 195883 346997 ~ 350322 (-)
G151972 NA non-coding upstream 226241 377355 ~ 377713 (-)
G151979 NA non-coding upstream 539545 690659 ~ 690942 (-)
G152071 NA non-coding upstream 847240 998354 ~ 1009739 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other downstream 27488 108398 ~ 120547 (-)
AMCG00005399 NA other downstream 48365 94352 ~ 99670 (-)
AMCG00005407 polr2j,LOC107587688 other downstream 81002 62355 ~ 67033 (-)
G152133 NA other upstream 1068213 1219327 ~ 1335440 (-)
AMCG00005419 NA other upstream 1220228 1371342 ~ 1376473 (-)
G152277 NA other upstream 1354826 1505940 ~ 1507628 (-)
G152271 NA other upstream 1370628 1521742 ~ 1615497 (-)
AMCG00005461 eif4h other upstream 1557569 1708683 ~ 1723500 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G386416 NA non-coding NC_047621.1 CM018567.1 13988556 ~ 13989316 (+)