AMCG00005406


Basic Information

Item Value
gene id AMCG00005406
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 54208 ~ 61323 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005406
TTGCCACAAAAAATATGGCGGCGCTAGAGAGCCGCTTGCGTCACTGGCCAGGGTCAGAGGGCATGGTGTCGTCACGCTTTCCCCGGGAAATTCACACACGCTGCAGTGAGGAGCACAGGACCCGCTGTCGCTTACCAGCCATGGCCAAGATCACAGAGACAGTCCTGCTGGAGAGGGGATCCCCCAGGACCACCCGGCTGGAGAACATCAAGACTCTCAATCTTTCCAAGATGGGTTTGTGCTGCGCAGATCTGCCCGTGGCCCTGCTGTCCCGGCTGCGCGGCCTGACACGGTTGAACCTCTCTGGGAACCGTCTGCGTGAGCTGCCCAGCGGCCTGCAGCTGCCCGGCCTGCACATCAGCTCCTCTGCCAACCACCTGCGCTACGTCAACACCGAGACCCTAAAGCGACGGGTGTCTGCTCTGTGGGAGAGCAGTTTCCAGCCCCTCACTGCCCTGACGGCGGAGCGCCGGCGCACCGTGGAGCAGGAGTTTGTGACGCTGGCCTGTGCCAAGGTCAAGTACGGCCCAAACTCCCTGAGCGACTACTACAGGTGGAGGGTGGAGATGCTAGCCAGGGCCCTGCTGCACTCGCTGGTGGAGGAGCGAGAGGGGGAGACGCTCGGCAACAGCCAGACGGACGCAGACGCCGGCCAGACCCACGCCGACCCGAGTCTCCGCTCCCCCCGCAAGAGGAGGGGCGCTGACTCGGGTTCCGGTCCAGAGCAGGAGACCCCAAAAAAATCCCGGCAGGCCGAAGCCGAGGCAGCTGAGCCCACCGCGTCCAGCCCCCGGAAGTCGTCCCGTCTGAAGAGTGTGCTCCCCCAGCCCGAGACACCCTCCAAAAGCCCCAGGAAGCCGGCGAGGGCAGACGGATGCCCCCCCGAGCCCGCCCTGCCCTGCACTGCCCCCAAGACACCCCCGAAGAGCCGCCCAGCAGAGGGGCCGAGGGAGAACGGGACGCCCCGCAAGACCAGCGGCTCGACGtgtttgGAGCCGGTGCACGTGCTGCAGTGTCACAGCCGGCAGGACAGTCCCGAGGACTTCAGCACCCAGCTGTGGGCCTGCGCCTTCCAGCCCGACTCGGACCCGGagcCCTGCGGCTCCAGTGTGGTGGCCACCTGTGGCGGGGAGACGGTGTGCCTGATTGACTGCCAGGCTGGGACAGTGCTCAAGAAGTACAAAGTGCCAGGAGAGGAGTTCTTCTCCCTGGCCTGGTCCAGCGTGCTGATGTCCCGGGAGGGGGGCACCCTGCGGCAGTGCGGCATGTTGGCGGCGGGGGGGCGGCGCGGCGTGGTCAAGCTCATCCACCCCCGGGCCAACTGTGCCTACGGGGAATTCCGCGCCAGCCGCCGCGCCCTGTCCGCCCTGCGCTTCAGCCCCCAGCGGCCCAGCTTCCTGTTCAGTGAGTGTCTGTCCCCCGTCCTCGTCCTGAGCGCAGGCTGGTCACCCTGGACGGGTTCACAGCTCGccgagaaacacacaaacaaaacaaactcctCACGCTTCAGTTTCCTCCTTATTTCTCGCGTCTTGCTTCGCGTCTGCATGTCAAGCCGGGTCGAATGCCTGACTGCTCTGGCCCGGAGCCCCACTTTTGCTCAACAGGGAGTGGCCGGGTCGTATGACAGCAGGGTGGTGCTGTGGGACATCGGCGGTGTGGACGGCAACTACAACTTCAAAGTCAGTCAGCTGATGATCCTGGAGACCGGCTCCACCCCACTGCACCTGAACCTGCCCCCCCTCTCGGCCGAGAGGCACTTGCTGGCCGCCTGTGACCGAGGCCTGCTCTGCTTCGACACACAGCTTGGCAAAAACCAGCTGAAGAGGAGCAGCGAGCTGGAGGTGGTGTTCCCTCTGTACAGAGAGGAGGACAACAAGAAGAACTTCCACACCATTGACGGCCTGGCCTTCCTCAACAACGACATCATCGCCTCCAAGAGCCACATGCAGGGATCCATCTACCTGTGGAGCTGGAGCCGCACGCTGGCCACCCGGCCCAACAAGCGCAGGGAGGTGGGAGCCGCGCTGCTGGCCGAGCTGCAGTGGTCCGGCACCGACCTGCCCTACCTGTCCCTCAGCACCTGCCCCGGTGAGGGGTACCTGGTGTGTGGGGACGAGAAGGGCAGCCTGTGGACCTACCACCTGACCGAGGAGCTGCTGGTCCGAGCCAGAGCTGGGAAACCCCTGCCTCCCACTCAGGTGCTGCAGTGGCCGGCCCCCGTGCTCAGAGGGGGTGGCCCTGTGGACGGCCCCTCCGTCAACAGCGTGGCCCTGGCCCCCAGGATGAAGTACCTGGTGGCCCTGACTGACAAGAACATGGTCGTGGTGTGGAGGAGAgtgtgaggaggaagaggaggagctggtGCCAGGCCAGTTTGCTGAAGCTGGATGGACTCTGCAGAGAGACTCGCACAATGTGGATCAGACACTTATTCTTATTTCGGTGTCAGTTCCTGTATTGCTCCTGACAGGACCGGCCCGTCTCAGAGTCGACAGAGGTGTTGgatttttaggttttttttaattaattttgatttgattttaaagagTGTCTCCTAGGGGGTGTGATAACCACGTCCGGGTTGTAAACAGATTTTGTTCTCGGGAGTCTGAACTCTCGGGGGAGAATCCCGTCTGTCTGGGAATCTGTAACAGGATTAAAGACCGTGGAGACTGA

Function

GO:

id name namespace
GO:0044427 obsolete chromosomal part cellular_component

KEGG:

id description
K24733 LRWD1; leucine-rich repeat and WD repeat-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005406 True 2679 mRNA 0.63 16 54208 61323

Neighbor

gene id symbol gene type direction distance location
AMCG00005408 bckdk,LOC107681895,LOC107685622 coding downstream 789 42629 ~ 53419 (-)
AMCG00005409 NA coding downstream 11935 41220 ~ 42273 (-)
AMCG00005405 orai2,LOC107081862 coding downstream 13178 38580 ~ 41030 (-)
AMCG00005397 gatsl2,LOC106567563,LOC106603747 coding upstream 19119 80442 ~ 90383 (-)
AMCG00005398 NA coding upstream 42807 104130 ~ 106498 (-)
AMCG00005401 doc2b,LOC107681901,LOC107685552 coding upstream 86712 148035 ~ 151114 (-)
AMCG00005396 NA coding upstream 165935 227258 ~ 232375 (-)
AMCG00005394 tmem248 coding upstream 186776 248099 ~ 251173 (-)
G151903 NA non-coding downstream 17813 35722 ~ 36395 (-)
G151901 NA non-coding downstream 21397 31994 ~ 32811 (-)
G151891 NA non-coding downstream 33652 20300 ~ 20556 (-)
G151957 NA non-coding upstream 180831 242154 ~ 332344 (-)
G151970 NA non-coding upstream 285674 346997 ~ 350322 (-)
G151972 NA non-coding upstream 316032 377355 ~ 377713 (-)
G151979 NA non-coding upstream 629336 690659 ~ 690942 (-)
G152071 NA non-coding upstream 937031 998354 ~ 1009739 (-)
AMCG00005407 polr2j,LOC107587688 other upstream 1032 62355 ~ 67033 (-)
AMCG00005399 NA other upstream 33029 94352 ~ 99670 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other upstream 47075 108398 ~ 120547 (-)
G152133 NA other upstream 1158004 1219327 ~ 1335440 (-)
AMCG00005419 NA other upstream 1310019 1371342 ~ 1376473 (-)

Expression


Co-expression Network