AMCG00005407 (polr2j,LOC107587688)


Basic Information

Item Value
gene id AMCG00005407
gene name polr2j,LOC107587688
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 62355 ~ 67033 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005407
CGGCAAAGAGGAAGAAGCTTCATTTCTAGTAACTGACTTtctgattaaacattttatttatgtcatCTAAGGAAACGACTACCTTGTGCCTGTGAGACGCTTTTCAGTCTGCACtgttgacctctgacctctgacacACTGCTGATGCTGTAGCTTCCCGTCGCGGTGCGTCCTCAGTGGGCCGTGTCTGTATTCCAGTCACTCACCTGCAGAAGGAGCACGCGTGACGAAAACTGTTCACCCAGGAAGCAGAGTCAGAGACGGCAGGTGACGGACAAGCCGCGTGACACAGGCCCGTGAGAGCGGCGGTCGAGCCCCCGGACAGAGACCGATACAGACCCCTATACAGCGCAGGCCTGATGGGGGAAGACAGTGTGGTCCAGTACCTTACCTCTGGACCGGGTAACTGTGCTCGTCCCCACACGCTGCCGGCAACAGAACCGGCCTCGGCTGATCGAAGGACTCCAGTATGTCGCTGCTTGGGATGGAAACTGGCTCCTGGCAAGGCGCGGGTCCGTGGCCCCGTCAGGGTATCGGGTTCTGGCCTCTCACTCCTATGTGGACGTCCGAATCCCTGCAGTGTTGCCGTTCAGGTGTAAACAGTCTTACAGGGTTACACTTAAATGCTGGTTTCATCATATCATATTACACCAAGACGGCCCGCTGTCCCAGCTTCCTGTCATAAATGCACGATTCACTCGTGTTTATAAATCTAGGCTGAAGAGTTTGTCCAATTTACTCCATCTCAAAGGGAAATTAATTGTAAATCTTTAATCTGAACTGTAGGGACGCATTGGCGCGCTAGGGTTTGTGTAACAAGGCAAGGGTGCAGGTGGctgtgagacacacagacagacagacagatacacagacacacagacatttgaTCTCATAGTGTTGTTGACAAAATGGCATCCCGCCAGCGCCCCCTGGTGTGTGGTTGCACATGTATGAGGCTTGTTCAGTGTTTGGGCGGCCATTTTCTGTGGTGCCTGCAGTGTGTGGGACGCAGCCGCTCTCTCCCGGGCCTCAGCGACTGAACCATGAACGCCCCGCCGGCCTTCGAGTCCTTCTTGCTGTTTGAAGGAGAGAAGAAAATTACCATCACCAAGGACACGAAGGTGCCCAATGCCTGTCTCTTCACCCTGAACAAGGAGGACCACACGCTGGGCAATATCATCCGCTCGCAGCTGCTGAAGGACCCCCAGGTGCTGTTCGCGGGGTACAAGGTGCCCCACCCCCTGGAGCACAAGATCGTGATCCGGGTCCAGACCACACCGGACTACAGCCCCCAGGAGGCCTTCACCAACGCCATCACCGACCTCATCAGCGAGCTGTGGCCATTAAGGACAAGCAGGAGGGCATCGAGTGAACGTGCTCTTGGGCCTCTCGCTGCAGCTGGATGTCTCAACATCGCAACTGGACCCCCCACCGGCCGCCCAACTCCATCTGTCCCCCAACAGACGCAGCGGGGCTCTGCAGGCCAGGAGCCGATCTCTGACTGTGGAAGGGAACCGATCATCGTGGCGGAAGTAAAGCCCGCGCATGCGCAGTGTTGTGATGCAGTCGCCATGGCCGGGGAGCCGAAGCCCGTCTGCGCCTGCAAGGGAATCCGCTCCTGCCTGCTGTGTGAGGGACCCGGCAAGACGGGCAGCCGCGACACCGCGCAGcagcCACTGCGGTTCATCTACGAGCCCCGGTCCGGCCGGGCGGTGAGGGCGGAGGGCGGGCACCGGCACTCGTTCGAGCTCCCCGGGGTCCTGCTGCTGGAGGAGTTCGTGtcggaggaagaggaggagcggCTGGTGAGCACCATGGACCGGGACCCCTGGATGGACTCGCAGTCCGGCCGCCGGAAACAGGACTTCGGGCCCAAGGTGAACTTCAAGAAGCAGCGTGTGCGCTTGGGGGGCTTCAGCGGCCTGCCCCCCTCGAGCCGGGAGCTGGTGCAGCGCATGGAGGGGCGGCCGGGACTGGGGGGCTTCCTGCCCGTGGAGCAGTGCAACCTGGACTACTGCCCCCGGCGCGGCTCAGCCATCGACCCCCACCTGGACGACGCGTGGCTGTGGGGAGAGCGGCTGGTCACCCTGAATCTGCTGTCGGACACGGTGCTCACTCTGAGCCGGGGCGGGGCGGAGGCGGGGGGCGTCGAGGCCGGGGGGGAGCTGTGGGTGTCGGTCCCGCTGCCCCGGCGCTCTCTGCTCGTGCTGGGGGGGGAGGCGCGGCACCGCTGGAAGCACGCCGTCCTGCGGCAGCACATCACGGCGCGCCGGGTCTGCTGCACCTTCCGCGAGCTCTCGGACAAGTTCCTGCCCGGGGGGCCGCAGGGGGCGCTGGGCTCCGAGCTGCTGGACATCGCGCTCAGCTTCCAGGGGGTCCCAGTATAG
>TU191268
GCAGTCGCCATGGCCGGGGAGCCGAAGCCCGTCTGCGCCTGCAAGGGAATCCGCTCCTGCCTGCTGTGTGAGGGACCCGGCAAGACGGGCAGCCGCGACACCGCGCAGcagcCACTGCGGTTCATCTACGAGCCCCGGTCCGGCCGGGCGGTGAGGGCGGAGGGCGGGCACCGGCACTCGTTCGAGCTCCCCGGGGTCCTGCTGCTGGAGGAGTTCGTGtcggaggaagaggaggagcggCTGGTGAGCACCATGGACCGGGACCCCTGGATGGACTCGCAGTCCGGCCGCCGGAAACAGGACTTCGGGCCCAAGGTGAACTTCAAGAAGCAGCGTGTGCGCTTGGGGGGCTTCAGCGGCCTGCCCCCCTCGAGCCGGGAGCTGGTGCAGCGCATGGAGGGGCGGCCGGGACTGGGGGGCTTCCTGCCCGTGGAGCAGTGCAACCTGGACTACTGCCCCCGGCGCGGCTCAGCCATCGACCCCCACCTGGACGACGCGTGGCTGTGGGGAGAGCGGCTGGTCACCCTGAATCTGCTGTCGGACACGGTGCTCACTCTGA
>TU191269
GCAGTCGCCATGGCCGGGGAGCCGAAGCCCGTCTGCGCCTGCAAGGGAATCCGCTCCTGCCTGCTGTGTGAGGGACCCGGCAAGACGGGCAGCCGCGACACCGCGCAGcCACTGCGGTTCATCTACGAGCCCCGGTCCGGCCGGGCGGTGAGGGCGGAGGGCGGGCACCGGCACTCGTTCGAGCTCCCCGGGGTCCTGCTGCTGGAGGAGTTCGTGtcggaggaagaggaggagcggCTGGTGAGCACCATGGACCGGGACCCCTGGATGGACTCGCAGTCCGGCCGCCGGAAACAGGACTTCGGGCCCAAGGTGAACTTCAAGAAGCAGCGTGTGCGCTTGGGGGGCTTCAGCGGCCTGCCCCCCTCGAGCCGGGAGCTGGTGCAGCGCATGGAGGGGCGGCCGGGACTGGGGGGCTTCCTGCCCGTGGAGCAGTGCAACCTGGACTACTGCCCCCGGCGCGGCTCAGCCATCGACCCCCACCTGGACGACGCGTGGCTGTGGGGAGAGCGGCTGGTCACCCTGAATCTGCTGTCGGACACGGTGCTCACTCTGA

Function

symbol description
polr2j Predicted to enable DNA binding activity; RNA polymerase II activity; and protein dimerization activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II, core complex. Orthologous to several human genes including POLR2J (RNA polymerase II subunit J).

NR:

description
DNA-directed RNA polymerase II subunit RPB11-a

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K10766 ALKBH4; DNA N6-methyl adenine demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005407 True 2387 mRNA 0.61 7 62355 67033
TU191268 False 559 TUCP 0.70 3 62621 63728
TU191269 False 556 TUCP 0.70 3 62621 63728

Neighbor

gene id symbol gene type direction distance location
AMCG00005406 NA coding downstream 1032 54208 ~ 61323 (-)
AMCG00005408 bckdk,LOC107681895,LOC107685622 coding downstream 8936 42629 ~ 53419 (-)
AMCG00005409 NA coding downstream 20082 41220 ~ 42273 (-)
AMCG00005405 orai2,LOC107081862 coding downstream 21325 38580 ~ 41030 (-)
AMCG00005397 gatsl2,LOC106567563,LOC106603747 coding upstream 13409 80442 ~ 90383 (-)
AMCG00005398 NA coding upstream 37097 104130 ~ 106498 (-)
AMCG00005401 doc2b,LOC107681901,LOC107685552 coding upstream 81002 148035 ~ 151114 (-)
AMCG00005396 NA coding upstream 160225 227258 ~ 232375 (-)
AMCG00005394 tmem248 coding upstream 181066 248099 ~ 251173 (-)
G151903 NA non-coding downstream 25960 35722 ~ 36395 (-)
G151901 NA non-coding downstream 29544 31994 ~ 32811 (-)
G151891 NA non-coding downstream 41799 20300 ~ 20556 (-)
G151957 NA non-coding upstream 175121 242154 ~ 332344 (-)
G151970 NA non-coding upstream 279964 346997 ~ 350322 (-)
G151972 NA non-coding upstream 310322 377355 ~ 377713 (-)
G151979 NA non-coding upstream 623626 690659 ~ 690942 (-)
G152071 NA non-coding upstream 931321 998354 ~ 1009739 (-)
AMCG00005399 NA other upstream 27319 94352 ~ 99670 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other upstream 41365 108398 ~ 120547 (-)
G152133 NA other upstream 1152294 1219327 ~ 1335440 (-)
AMCG00005419 NA other upstream 1304309 1371342 ~ 1376473 (-)
G152277 NA other upstream 1438907 1505940 ~ 1507628 (-)

Expression


Co-expression Network