AMCG00005408 (bckdk,LOC107681895,LOC107685622)


Basic Information

Item Value
gene id AMCG00005408
gene name bckdk,LOC107681895,LOC107685622
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 42629 ~ 53419 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005408
GGGCAGACCGCGGCGCATCGGGAGACGGGCGCTGCACATGGCGGTGCCAGCAGCGCTGACAGCGGAGAGCACAGAGGCCCTGCGGTGCCCGGGAGGCTGCGGGAAATGAAGGGAGCACTGTAAATCCCtggttgttttattgtgttttcacCCCCCCCTTCTCACTACGCGCCCAGGAAGCCGCTCAGGCCTCGTCACCGCGGGACAGCAGGAGCCCCGACCCGCACAGGAGCAGCGATGCGCGGCGCGGTGGCCGGCAGGGCGCTGCAGAGGCTGGGCGCTTCTGTGGCCGCCAGCCCGGGGGGGACCCGTGTCCGGACAGGGACTGGAGCTCTGCTGCCCGCGTCCGCAGCCGGCAGCGGGGCGTCCACTCGGTCCCGGTCCACGTCCTCCATGCAGGGCTACTCGGAGCTGGCCCGGGAGAGGTCCAAAACCGTTACGTCCTTCTACAACCAGTCTGCCATCGACGTGTGCGCTGAGAAGCCCTCTGTCCGCCTCACCCCGGCCACCATGCTGTACTCGGGAAAGTCTCCGGATGGCAGCCACGTCCTGagcAGTGCCAAGTACCTGCAGAAGGAGCTGCCCGTGCGCATCGCCCACCGGATCAAGGGCTTCCGCAGCCTGCCCTTCATCATTGGCTGCAACCCCACCATCCTGCAGGTGCACGAGCTGTACATCCGTGCATATCACATGCTCAGCGACTTCCCGGCGATCACAGACCAGGAGACCGAGGCTCAGTACAGTAAGCTGGTGCAGCAGCTGCTGGACGACCACAAGGACGTGGTGACTATGCTGGCCGAGGGCTTCCGGGAGAGTCGCAAGCACATCCAGGACGAGGCCCTGATCCGCAACTTTCTGGACACGACGCTGACCTCGAGACTGGGGATCCGCATGCTGGCCACCCACCACCTGACCCTGCACCAGGACAACCCTGAGTTTGTGGGCATCATCTGCCGCCGCCTGTCCCCGAAGAAGATCATCGAGAAGTGGGTGGACTTTGCTGGccGGCTGTGTGAGCACCAGTACGGCAGCTCCCCGCGGGTGCGGATCAATGGACACGTCGCCGCGCGCTTCCCCTTCATCCCTCTCCCCCTGGACTACATCCTGCCCGAGCTGCTGAAAAACGCTATGAGaGCGACGATGGAGAGTCACCTGGACACCCCCTACAATGTGCCAGACCTGGTGGTCACCATCGCCAACAACGACACAGACTTCGTCATCAGGATCTCGGACCGGGGAGGCGGGATTCCCCATAGCATCCTGGACAAGGTGCTGGACTACCACTTCAGCACCGCGGAGGAGAGCGCGCAGGACCCCCGGCTCACCGGCCTGTTCAACACCATCACCAACAGCGGCCCACAGTCGGGGCCCATGCACGGGTTTGGCTTCGGGCTGCCCACATCACGCGCCTACGCCGAGTACCTGGGCGGCTCGCTGGCCATCCAGTCCCTGCAGGGCATCGGCACCGACGTCTACCTGCGCCTGCGCCACATCGACGGCAAGGGAGAGAGCTTCCGCATCTGAGCCACCCTGGGACCCCCCCCCAGTGCTGACTTCTCCATGAGAGCCTGCAGGACAGACCCCGGCCAGGCACCACGGGACTCCCCTCTCAGACCGCAGAGACCGATCACAGCGACCCGGGGAGGGCGCTTCTCTGCCCACTGACTCTCGGAGAGAAGCAGCAGAGACGCTCACTGTGTGGGGTTCGCTGTCCTCGGTCGACAGCATCTCAGTCTTGTATTCGTTTGGCTTCTGAATCGCAGTGCAGGCCACGGCAGCGAGAGACGGCCCTGCACAGCGACACGCGGGAGCCACTTTACTGCACAGCACGTCGAACTTCCACATGAATGACTTCAGAACACGCTGAACTACACGCACCGCACCACAGTCCTCTCGGTTCATTCAATGCTTCGTTCTGTAAGTGATCGGTGCAGCTCCGTGAAATCGATCGGAGATAGTGTTATTCACTTACGAACCGCATTCAAACATATGGGACTCGATCAGGTTGGTGAAAATCGATGTAAAACAATCACAGATCAAAAAACTAACTCTTGGATGCAGAATGAGATGTTTTTTTCAGGAGTGAGTGTTGCCTCTATACTGTGTTTATATCATTCTCTGATAATATGGGAAATCTACAAATAATATCGgcagattttgtatttaattgatatgtATTTCTGTGATGTCCTCATAGCGGAGGCATCTTTAAACGATGTCAGCTGAGAAACACCCTAAGTACGTCATCTCTGGGGAAATGGAATGATTTTGTACGTGGGttttatgatgtattttatAAAGGGTACAGATCTGTGTATTTGTGCTTGTGTGGCTCAGACCGTGGCATCCAGGGCAAACCCTGTCTCTGCCTGGTGCCGTGTTTCGCTGCTGACGGATGATGTTGCAGCACGGGGAATGTTCTGGGGGGGTGGGAACGGTATTGTGTTCAGGTTGCACAATCACAGCCGGTTGTGCATTCACAACGTTGTGGGCTGGGAACTGCAGCGAGGATCTGTACTTGGACACTGCGGTCCGTGGAGACGATAACGAGAAACGTCCAGTTCGCTATCCAGGCATTCACTGAACCAGGACAGCCCGCCGGTTTCCAGCGCTTGTTCTCCTGCCACGTCAACGCCAGAGGCCCTTCTCTCGATTTCTCTCCACGTTTCAGGAGAGCGCAGGCCAGCTTGTGAGCCACGGGCGCCCTCTGATGGACAACTCTGAAATTACATGGACAACAAAAATATGCTAATCGGTGTAAAACGTTGATGTTATCCTTTTAATTGAATCCCCCTTTGATTGCTTTTATAATTTTGCATTATGGCAGTTACTAAATGAAAACCATGATATGCTAATTCAATACAAACCTCCCTCTTGTATTATTATAGCCACATTGTGTAGCAGTATATTTTCAGTCATCATGAATTTGTACTAAcctgtttgattttatttacattgatctTTTCCTTAGCTGTATCATGTTATATAGTTCCTTTGGGCATTAAATGCTGTAAAACAAGA

Function

symbol description
bckdk Predicted to enable pyruvate dehydrogenase (acetyl-transferring) kinase activity. Predicted to be involved in protein phosphorylation and regulation of glucose metabolic process. Predicted to act upstream of or within phosphorylation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in several structures, including midbrain neural keel; midbrain neural rod; neural plate; pancreatic system; and primary neurons. Human ortholog(s) of this gene implicated in branched-chain keto acid dehydrogenase kinase deficiency. Orthologous to human BCKDK (branched chain keto acid dehydrogenase kinase).

NR:

description
PREDICTED: 3-methyl-2-oxobutanoate dehydrogenase [lipoamide] kinase, mitochondrial

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K00905 BCKDK; [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005408 True 3021 mRNA 0.56 11 42629 53419

Neighbor

gene id symbol gene type direction distance location
AMCG00005409 NA coding downstream 356 41220 ~ 42273 (-)
AMCG00005405 orai2,LOC107081862 coding downstream 1599 38580 ~ 41030 (-)
AMCG00005406 NA coding upstream 789 54208 ~ 61323 (-)
AMCG00005397 gatsl2,LOC106567563,LOC106603747 coding upstream 27023 80442 ~ 90383 (-)
AMCG00005398 NA coding upstream 50711 104130 ~ 106498 (-)
AMCG00005401 doc2b,LOC107681901,LOC107685552 coding upstream 94616 148035 ~ 151114 (-)
AMCG00005396 NA coding upstream 173839 227258 ~ 232375 (-)
G151903 NA non-coding downstream 6234 35722 ~ 36395 (-)
G151901 NA non-coding downstream 9818 31994 ~ 32811 (-)
G151891 NA non-coding downstream 22073 20300 ~ 20556 (-)
G151957 NA non-coding upstream 188735 242154 ~ 332344 (-)
G151970 NA non-coding upstream 293578 346997 ~ 350322 (-)
G151972 NA non-coding upstream 323936 377355 ~ 377713 (-)
G151979 NA non-coding upstream 637240 690659 ~ 690942 (-)
G152071 NA non-coding upstream 944935 998354 ~ 1009739 (-)
AMCG00005407 polr2j,LOC107587688 other upstream 8936 62355 ~ 67033 (-)
AMCG00005399 NA other upstream 40933 94352 ~ 99670 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other upstream 54979 108398 ~ 120547 (-)
G152133 NA other upstream 1165908 1219327 ~ 1335440 (-)
AMCG00005419 NA other upstream 1317923 1371342 ~ 1376473 (-)

Expression


Co-expression Network