AMCG00005411 (cux1,LOC105006988)


Basic Information

Item Value
gene id AMCG00005411
gene name cux1,LOC105006988
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1255042 ~ 1258125 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005411
GCCCGTTACGCGGAGCTGCAGCTGGACTTCTCGGAGGCGGTGCAGACCGGCGCTGAGCAGAAGGAGCTCATCCTGAAACTGGAGCATGACCTCAGCACGGTCCAGTCCATGTCGTCTCTGCAGCGGCCCGACGCCGAGGGGGCGGACTTCAGCCATCTGGAGATTCCTGAGCCGATCAAGGAGGCCACCGCGCTCTTCTCTGGTGTGGCCGTGTCCCCACAGGTGGACTTCCCCCAGGGACAGATGGACTCCCTGCTGTCCATCATCTCCAGCCAGAGGGAGCGCTTCCGAGCGCGCAACCAGGAGCTGGAGGCCGAGAGCCGCTCTATGCAGCAGACCATGCAGGCCCTTCAGAGTGAGCTGGACAGCCTGCGGGCCGACAACATCAAACTGTACGAGAAGATCAAGTTCCTGCAGAGCTACCCAGCCAGGGCCTCGGGCAGTGATGACACAGTGCTGCGTTACTCCTCGCAGTATGAAGAGAGACTGGACCCCTTCGCCTCCTTCAGCAAGAGGGAGCGCCAGCGCCGTTACCTGAGCCTCAGCCCCTGGGACAAGGCCACTCTCAGCATGGGCCGCGTGATCCTGTCCAACAAGATGGCGCGTACCATCGCCTTCTTCTACACCCTGTTCCTGCACTGCCTGGTCTTCCTGGTGCTGTACAAGACTGCATGGAGTGAGAGCATCGGACGAGACTGTACAGCCTACTGCGCCAAGAAGTACTCGGACCACCTGCACCGTTTCCACGAGAACGGGGAGAACGGGGACATGTGGCAGTGATGTCATCGCCGGGCCGGATCTCCTCTCCCGCAGCGCCGCGCCACTAGAGGGAGACTCCCCGCTTCACGCTTGCATAGCCAGAGCATCCGATCGATTCCCCTGTGCTGAAAGGGACCAACATCTGTGGGCTTTGTTACTGTTTTCGGGCTGtttttttggggttttttttattttcttccatattATAATTAGTTTAAGACTTAATTATGGTTATTTAAGGTTTGCAGATTTAAGCGGAGGATTGTAGACACTTGTTTGCATCTGATATGTTATTGGCTTATATTATCCAGGGGGGCAGTGGGGGGATTAATTTGttacacagacactcacaccacacacacacatacacacacacacacacacacacacacacacatactacacacacacacactacacacacacagacactcacaccacacacacagacacacacaccacacacacagacacacacacacacagacacacacacacacatatacacactacacacacacacacactacacacacacatacacactacacacacacacagacacacaccacacacactcacactacacacacacacacaccacacacacactcacactacacacacacactcacactacacaCGCACATTCACActacacatgcacattcacactacacactcacactacacacacactacacacacacacactacacacactcacactacacacgcacagacacacaccacacacacagacacacactcacactacacacgcacact

Function

symbol description
cux1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in positive regulation of dendrite morphogenesis and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within animal organ development and negative regulation of transcription by RNA polymerase II. Located in Golgi apparatus and nucleoplasm.

NR:

description
PREDICTED: protein CASP isoform X3

GO: NA

KEGG:

id description
K09313 CUTL; homeobox protein cut-like

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005411 True 1548 mRNA 0.54 9 1255042 1258125

Neighbor

gene id symbol gene type direction distance location
AMCG00005410 NA coding upstream 10167 1214157 ~ 1244875 (+)
AMCG00005390 NA coding upstream 164361 1083158 ~ 1090681 (+)
AMCG00005464 NA coding upstream 173624 1073052 ~ 1081418 (+)
AMCG00005466 NA coding upstream 182801 1063490 ~ 1072241 (+)
AMCG00005465 NA coding upstream 219011 1030879 ~ 1036031 (+)
AMCG00005415 LOC107573094,LOC107551239 coding downstream 26162 1284287 ~ 1295448 (+)
AMCG00005414 wbscr22 coding downstream 42912 1301037 ~ 1305072 (+)
AMCG00005412 NA coding downstream 63683 1321808 ~ 1322595 (+)
AMCG00005416 LOC108240947,LOC106533470 coding downstream 84635 1342760 ~ 1359523 (+)
AMCG00005413 kctd7 coding downstream 123616 1381741 ~ 1384590 (+)
G152111 NA non-coding upstream 1083 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 197647 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 240662 1014078 ~ 1014380 (+)
G151978 NA non-coding upstream 564106 690659 ~ 690936 (+)
G151968 NA non-coding upstream 718350 535895 ~ 536692 (+)
G152196 NA non-coding downstream 200029 1458154 ~ 1458747 (+)
G152198 NA non-coding downstream 203599 1461724 ~ 1461939 (+)
G152397 NA non-coding downstream 997240 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1813825 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1925696 3183821 ~ 3186988 (+)
G151969 NA other upstream 717679 536751 ~ 537363 (+)
G151967 NA other upstream 855177 398925 ~ 399865 (+)
G152159 NA other downstream 108889 1367014 ~ 1367956 (+)
AMCG00005418 NA other downstream 118343 1376468 ~ 1379302 (+)
AMCG00005434 NA other downstream 251377 1509502 ~ 1517580 (+)
G152267 NA other downstream 487835 1745960 ~ 1748934 (+)
G152337 NA other downstream 541686 1799811 ~ 1803903 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location