AMCG00005413 (kctd7)


Basic Information

Item Value
gene id AMCG00005413
gene name kctd7
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1381741 ~ 1384590 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005413
atgcagcagcagcagcagcagctcaatGGAGCCGCCGAGGCCTGCGCCGCTCCGTGCGGCCCGGGCTCTGCGGCTCAGGCGCGGATGAGGGGCGGCACCCCGGACCGGCGCACGGTGCCCCAGCCTCGGGTGAGGGTGGTCTTCTCGGGCCACGACGAGGCTGACACCGAGAGCGGCGATGCGATGGCACAGTCCGCCGAGGACGAGCGCAAGaagccgccgccgccgccgcctctGCACAACCTGGACCTGGGCAAGCCTGTGCGCGCATACAGCGCCCTGCAGGAGTTCCCAGAGGTCGTGCCCCTGAACGTGGGCGGCACCTACTTCACCACGCGGCTGTCCACTCTGCGGCGCCACGAGGACACCATGCTGGCTGCCATGTTCAGCGGGCGGCACCACATCCCCCGCGACTCGGAGGGGCGCTACTTCATCGACCGTGACGGCGCCTACTTCGGGACTGAACCGCTGACCGGGGAGAAGGTGCGCCAGGCCTTCCTGGACCTGCTGCCCTACTACAAGGAGAACCTGGAGCGCATCATCGAGATCGCCAAGCTGCGCGCCACGCAGAGGAAGGCGCGCTTCGCCAAGCTGAAGATCTGCGTGTACAAGGAGGAGATGCCCGTGACGCCGTACGAGCGGCCGCTGTTCAACTCGCTGCGCTTCGAGAGGAGCGAGAGCGAGGCCAAGCTGTTCGAGCACCACTGCGAGGTGGACGTGACCTTCGGCCCGTGGGAGGCCGTGGCGGACGTGTACGACCTGCTGCACTGCATCGTGAGCGACCTGGCGCAGAGCGGCATCACGGCCGACCACCAGTGCATCGGCGTGTGCGACAAGCACCTCATCAACCACTACTACTGCAAGAGGCCCATCTACGAGTTCAAGATCACCTGGTGGTGA

Function

symbol description
kctd7 Predicted to be involved in membrane hyperpolarization and positive regulation of transporter activity. Predicted to act upstream of or within protein homooligomerization. Predicted to be located in cytosol and membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 3. Orthologous to human KCTD7 (potassium channel tetramerization domain containing 7).

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD7, partial

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K21917 KCTD7_14; BTB/POZ domain-containing protein KCTD7/14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005413 True 900 mRNA 0.67 5 1381741 1384590

Neighbor

gene id symbol gene type direction distance location
AMCG00005416 LOC108240947,LOC106533470 coding upstream 22218 1342760 ~ 1359523 (+)
AMCG00005412 NA coding upstream 59146 1321808 ~ 1322595 (+)
AMCG00005414 wbscr22 coding upstream 76669 1301037 ~ 1305072 (+)
AMCG00005415 LOC107573094,LOC107551239 coding upstream 86293 1284287 ~ 1295448 (+)
AMCG00005411 cux1,LOC105006988 coding upstream 123616 1255042 ~ 1258125 (+)
AMCG00005424 LOC106567664 coding downstream 4098 1388688 ~ 1402701 (+)
AMCG00005425 NA coding downstream 18456 1403046 ~ 1406537 (+)
AMCG00005422 trim37,LOC103132205,LOC106941548 coding downstream 23843 1408433 ~ 1425336 (+)
AMCG00005423 NA coding downstream 84586 1469176 ~ 1480171 (+)
AMCG00005437 NA coding downstream 101623 1486213 ~ 1490622 (+)
G152111 NA non-coding upstream 127782 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 324346 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 367361 1014078 ~ 1014380 (+)
G151978 NA non-coding upstream 690805 690659 ~ 690936 (+)
G151968 NA non-coding upstream 845049 535895 ~ 536692 (+)
G152196 NA non-coding downstream 73564 1458154 ~ 1458747 (+)
G152198 NA non-coding downstream 77134 1461724 ~ 1461939 (+)
G152397 NA non-coding downstream 870775 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1687360 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1799231 3183821 ~ 3186988 (+)
AMCG00005418 NA other upstream 2439 1376468 ~ 1379302 (+)
G152159 NA other upstream 13785 1367014 ~ 1367956 (+)
G151969 NA other upstream 844378 536751 ~ 537363 (+)
G151967 NA other upstream 981876 398925 ~ 399865 (+)
AMCG00005434 NA other downstream 124912 1509502 ~ 1517580 (+)
G152267 NA other downstream 361370 1745960 ~ 1748934 (+)
G152337 NA other downstream 415221 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 544865 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 1119320 2503910 ~ 2510676 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_15891065_15894363 KCTD7 coding CI01000304 null 15890803 ~ 15894363 (-)