AMCG00005414 (wbscr22)


Basic Information

Item Value
gene id AMCG00005414
gene name wbscr22
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1301037 ~ 1305072 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005414
CAATAATATTGCAAGCAAAgagcagatctgtgcagaactgcgcacAACTGCGCTGCAAGACCGCGACCACAACTTCTGAACGTGTCGCTGAAAGATGACGTCACTCAGCGCAGCCATGTGTTGCCGTGTGTGAAGACGCGAGCTCTGGCAGGcgtgtgtttacagtgttttctTCTCGTTTTTGTTGAACTtccatacaataaaacatgtctTCGAGCTGCCGCAGACCCGAGCACATGGCCCCGCCGGAGGTGTTCTACAATGCGGATGAAGCCAAGAAGTACACACAGAACTCCCGCATGATCGAGATCCAGAGCCAGATGTCCGAGAGGGCCGTGGAGCTGCTCAGCCTGCCCGAGGGACAGCCCTGCTACCTGCTGGATGTGGGGTGCGGCTCGGGGCTCAGTGGAGACCACCTGTCTGAAGAGGGACACTGCTGGGTGGGAGTGGACATCAGCACAGCCATGCTCGACGTTGCTCGGGACCGGGAGGTGGAAGGAGACCTGATCCTGGGAGACATGGGCCAGGGGATGCCTTTCAGACCAGGGACCTTTGATGGGGCAATCAGCATCTCTGCCCTGCAGTGGCTCTGCAATGCGGACAAGAAGTCTCACAGCCCCCCGAAGCGGCTCTACCGGTTCTTCAGCACGCTGTACTCTGCGCTGGCCCGGGGGTCTCGCGCTGTGTTCCAGATTTACCCTGAGAACTCCGAGCAGCTGGAGCTCATCACAGCGCAGGCGATGAAGGCGGGCTTCACTGGGGGCATGGTGGTGGACTACCCCAACAGCACCAAGGCCAAGAAGTTCTTCCTCTGCCTGTTTGCCGGCGTGTCGGGGGCTTTGCCGAAGGGTCTGGGCTTGGAGACGGTGGAGAGAGGGGTCCCCAACCAGGCATCGTTCACCGGACAGAGATCTCgcttcaagcacatgaaagggAAGTCAGTGAAGAAGAGTAAGGACTGGATCGtggagaagaaggagaggaggCGGCGGCAGGGCAGGGAGGTCCGAGCCGACACCAAGTACACCGGACGCCAGAGGAAGCCCCGGTTCTGACGCTGGCCGTGGTCGAGCTGTGGGCCCTGTGAACCGGACCCCAAAGCAGTCGGAGGTGTAGCGGTGTGGACTGTCGACCTGTCTCACCCCCGACACGATGTCCCCGGTGCCGAGAGAGTGGAGCTGCAGTCAGAGCTCGGCGCCTGAGGGTCCCTGGAGAACATGgcagtaccccccccccccccccccccaagaacCTATTTAATAGcgtgtgctttttcttttatggCAAGGAAACCGAAATCGAGTACCTGGTGTCTGAGATTCCCCGTGGACCCCCGGAG

Function

NR:

description
PREDICTED: probable 18S rRNA (guanine-N(7))-methyltransferase

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K19306 BUD23; 18S rRNA (guanine1575-N7)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005414 True 1339 mRNA 0.60 12 1301037 1305072

Neighbor

gene id symbol gene type direction distance location
AMCG00005415 LOC107573094,LOC107551239 coding upstream 5589 1284287 ~ 1295448 (+)
AMCG00005411 cux1,LOC105006988 coding upstream 42912 1255042 ~ 1258125 (+)
AMCG00005410 NA coding upstream 56162 1214157 ~ 1244875 (+)
AMCG00005390 NA coding upstream 210356 1083158 ~ 1090681 (+)
AMCG00005464 NA coding upstream 219619 1073052 ~ 1081418 (+)
AMCG00005412 NA coding downstream 16736 1321808 ~ 1322595 (+)
AMCG00005416 LOC108240947,LOC106533470 coding downstream 37688 1342760 ~ 1359523 (+)
AMCG00005413 kctd7 coding downstream 76669 1381741 ~ 1384590 (+)
AMCG00005424 LOC106567664 coding downstream 83616 1388688 ~ 1402701 (+)
AMCG00005425 NA coding downstream 97974 1403046 ~ 1406537 (+)
G152111 NA non-coding upstream 47078 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 243642 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 286657 1014078 ~ 1014380 (+)
G151978 NA non-coding upstream 610101 690659 ~ 690936 (+)
G151968 NA non-coding upstream 764345 535895 ~ 536692 (+)
G152196 NA non-coding downstream 153082 1458154 ~ 1458747 (+)
G152198 NA non-coding downstream 156652 1461724 ~ 1461939 (+)
G152397 NA non-coding downstream 950293 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1766878 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1878749 3183821 ~ 3186988 (+)
G151969 NA other upstream 763674 536751 ~ 537363 (+)
G151967 NA other upstream 901172 398925 ~ 399865 (+)
G152159 NA other downstream 61942 1367014 ~ 1367956 (+)
AMCG00005418 NA other downstream 71396 1376468 ~ 1379302 (+)
AMCG00005434 NA other downstream 204430 1509502 ~ 1517580 (+)
G152267 NA other downstream 440888 1745960 ~ 1748934 (+)
G152337 NA other downstream 494739 1799811 ~ 1803903 (+)

Expression


Co-expression Network