AMCG00005415 (LOC107573094,LOC107551239)


Basic Information

Item Value
gene id AMCG00005415
gene name LOC107573094,LOC107551239
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1284287 ~ 1295448 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005415
ATGCCCTGGGGATCCAGTCTTCTGCTGCTGGGAGCTGCCCACGTCCTGCAGAGTGGGTTGTGTTCTGTGCACCGCAGCCCTGCGGCTTGGCACTGTTCGGGCAGGCTAGAGAGGCGTGCCAGGCCTCCCCCCCAGTGGTGGAATGGAGCAGCCATGAATGGCGCCGCCCCCCCGAGCCCTGAGCCGCCCTGCCCACTGCCCGACTGGAGGGAGTTCTGCGAGGTGCACGCCCGCGCCTCCGCCTCCGACTTCGCCGACAAGTTTCGCCGCTTCGTCAGCGAGAACCCGTGCTACGACTCTCCGGGCGCCGACACCACCTTCTCCCAGCACTTCGCCCAGCACTTCCTGGACTGCTTCTCGGCCGAGCTGAGCCGGGTGCACACGCCGGGGTCGCCGGGCGGAGCCAAGTACAGCATCGTGCCCTTCGTGGGGCTGCAGAGCTGCCCGCTGCCCTACGGCCGTGACCTCTACCTGCGGCGCCGAGACGCGGGGGCATCCAGCGAGTCTCTGGACAGCATGGACAGCGGCCCGGGCAACCCCGCCCCCCGGGGACAGCCGCCCGCGCACAAGGTGTCGGCACTGGGCCAGTCGCGCAGCTCCGAGGACGTGTCGGCCGGCCACCCCAAGGCCAAGTTCAAGAAGGGCTTCTCGCTGCGCAACATGAGCCTGTGCGTGGTGGACGGCGTGAAGGAGATCTGGCACCGCCGCTCCTCGCCGGAGCCCGACTCCGGCCGCAGAGCCAACGGGGAAGCGGGGGACAAGTGGAGCCAGCGGCTGCGGCTCTCCCGGGCCTCTCAGGCGCCCAAGGCAGACCTGCTGGAGATCCAGAGGGAGGGGGCGCTGCGGTACATGGTGGCGGACGACACCAACTGCGTGGGCAGCTCCCAGTGGCAGAAGTGCCGGCTGCTGCTGCGGAAGACCTCGCGCACAGAGGGGGAACGCTTCCTGCTGGAGTTCTACGTGCCGCCCAAGtcctccAAGCCCAAAGTGAGCATCCCTCTGTCTGCCATTGTGGAGGTGCGGACCACCATGCCCCTGGAGATGCCAGACAAGGACAACACCTTTGTGCTCAAGGTGGAGAACGGGGCGGAGTACATCCTGGAGACCATCGACTCCCTGCAGAAACACTCCTGGGTGGCAGACATTCAGGACTGCATAGACCCGGGGGCCTTGCCTCCAGCACACAATTACCAGGCAAGCCAGGCAAGgGACAGGGACAGTGGCGATGACATCGAGTTGGCCTCCTGTCCCCATGGTCCGGCCAGCAGGGACTTCCCAATGGTGTCGTCCTGCAGCTGCGAGCTTCTCTCCGAGGGTGTGCACCGAGTCCCCGAGCGGCCCTGCGCTGCTGCTACTGCTCACGAGCCCCACAGTGCCCCCTCTGTCCGCTGCCGGGATTCGCCCTTCACGGAGCACCCCATGCACGTCCCCCTGGAGCGCTTCCTGCAGTCACTGGAGGCCCCTGGGCCCGGGCCGTCCACAGGGGCTCCCACCAGTGAAGCCGGGGAGTCGGAAGGGGACGCCAGCCTGGCCGGTTACCCCTGGTTCCATGGCACACTGTCCCGGGTGCGGGCCGCCCAGCTGGTCCTGGCAGGGGGGGCGCGCAGTCACGGGCTCTTCGTGATCCGGCAGAGCGAGACGCGCCCGGGGGAGTACGTCCTCACCTTCAACTTCCAGGGCAAGGCCAAGCACCTGCGGCTGTCTGTGAACGATAACGGCCAGTGCCACGTCCACCACCTGTGGTTCCAGACGGTGTCTGACATGCTGCGCCACTTCCATGCCCACCCCATCCCCCTGGAGTCCGGCGGCTCGGCGGACATCACCCTGCGCTGCTACGCCCAGGCCCAGCGCCCCGCCCCCGAGTCTGGGGTCCCTCAGCATCCCCCCGCGCCCAGAGAGGCGGGCTGTCGGACAGACCTCCACCAATCTCCGCACTATTTCTCCGGGGCCTTCCAGCCCCCCGGCCCGCCCCCAGACGCTCCCCcgccctcctcctccagctcctcctcccccaccaccctgcCGCCCTTCCCCCGGGGCGAGACTGGGAGTGGGGGAGTGAGTGGCGGCGGGGGGGGCCTGCGCAGCCGGAGCAACAGCTCGGAGAGGCTGCTGGAGCCCCCCAGCGGCTCTTCGGAGGACTACCACGAGAGCGACGGCAGTCGGAGGACAAGAGCCGTCGAGAACCAGTACTCCTTCTACTGA

Function

NR:

description
PREDICTED: SH2B adapter protein 2-like

GO: NA

KEGG:

id description
K07193 SH2B, APS; SH2B adapter protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005415 True 2205 mRNA 0.68 10 1284287 1295448

Neighbor

gene id symbol gene type direction distance location
AMCG00005411 cux1,LOC105006988 coding upstream 26162 1255042 ~ 1258125 (+)
AMCG00005410 NA coding upstream 39412 1214157 ~ 1244875 (+)
AMCG00005390 NA coding upstream 193606 1083158 ~ 1090681 (+)
AMCG00005464 NA coding upstream 202869 1073052 ~ 1081418 (+)
AMCG00005466 NA coding upstream 212046 1063490 ~ 1072241 (+)
AMCG00005414 wbscr22 coding downstream 5589 1301037 ~ 1305072 (+)
AMCG00005412 NA coding downstream 26360 1321808 ~ 1322595 (+)
AMCG00005416 LOC108240947,LOC106533470 coding downstream 47312 1342760 ~ 1359523 (+)
AMCG00005413 kctd7 coding downstream 86293 1381741 ~ 1384590 (+)
AMCG00005424 LOC106567664 coding downstream 93240 1388688 ~ 1402701 (+)
G152111 NA non-coding upstream 30328 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 226892 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 269907 1014078 ~ 1014380 (+)
G151978 NA non-coding upstream 593351 690659 ~ 690936 (+)
G151968 NA non-coding upstream 747595 535895 ~ 536692 (+)
G152196 NA non-coding downstream 162706 1458154 ~ 1458747 (+)
G152198 NA non-coding downstream 166276 1461724 ~ 1461939 (+)
G152397 NA non-coding downstream 959917 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1776502 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1888373 3183821 ~ 3186988 (+)
G151969 NA other upstream 746924 536751 ~ 537363 (+)
G151967 NA other upstream 884422 398925 ~ 399865 (+)
G152159 NA other downstream 71566 1367014 ~ 1367956 (+)
AMCG00005418 NA other downstream 81020 1376468 ~ 1379302 (+)
AMCG00005434 NA other downstream 214054 1509502 ~ 1517580 (+)
G152267 NA other downstream 450512 1745960 ~ 1748934 (+)
G152337 NA other downstream 504363 1799811 ~ 1803903 (+)

Expression


Co-expression Network