AMCG00005416 (LOC108240947,LOC106533470)


Basic Information

Item Value
gene id AMCG00005416
gene name LOC108240947,LOC106533470
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1342760 ~ 1359523 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005416
ATGAAGGTCTTCACGTGGCTGGGCTGTGGGGCACAGCGCAGTCCGAGGGCTGATCGCATCGAGCAGACCATCGAGCAGAGCGCCGAGACGGAGGATGGCGTGAACAGGTCCTCGGCAGACCTGCGGATACGCAAGACACagGCACAGGAAGTGTCCGGGTGCCGCTGCAGCGCCCTGAGAAAGTGCGTCACCCGCTGCACCTGCCTTCCACTCCAATTAACCGTAAACCAGAGCTGCACCTGGTGTACCGTCCATACAGAAAGGAAGACCGCAGAGCGCAGCACATGGGCCACAGGGGATAGGCGCCGCGGCGGGCCGGTGTGGCTGGGTCTCTCTCGGTCTCATGTCTTCTCTCTCGTCTCCCCTCACCCCCCACAGCATTCCACCCTGTCCCGCAAGTTTGTGGAAGTGATGTCGGAGTACAATGCCACCCAATCAGACTACAGGGAGCGCTGCAAGGGCCGAATCCAGCGCCAACTGGAGATCACTGGCAGGAACACAACCAATGATGAGCTGGAGAGCATGCTGGAGAGCGACAACCCAGCCATCTTCACCTCTGGGATCGAGACGCGGCACACCGAGATCATCAAGCTGGAGAACAGCATCCGTGAGCTGCACGGCATGTTTGTGGACATGGCCATGCTGGTGGAGAGCCAGGGGGAGCTGGTCAACAACATCAAGAAGAACGTGCTGCGCGTGGGAGAGTACGTGGAGCGGGCCGAGCACGAGACCAAGAGGGCCACCAGCCTGCAAAAGAGGAGCCGACTGGTGAGTGAGCGCACACCTCCCCTGAGCAACCTCTCAacacctctctctgtctctctgtctctgtctctgtctctgtccctctctctctgctggcgGCAGGGGGAGATGATTGACCGTATCGAGTACAACGTGGAGCACTCAGTGGATTATGTGGAGCGGGCCGTGTCTGACACCAAGAAGGCCGTTAAGTACCAGAGTAAAGCACGGAGGGTGagtctggggtgggggggcagggcgCACATGCAAAATACCTGGACTTCTGCTCCCGCCCACTTCCAATCTGTGCCTGTGCATGACGGACAGTATCCCGTGGCGTGGGGTGGCATGGGTGTTGGGATGTGCCAGTTCTGTGCCCACACAACATTCTCCTACACCTCCATCTATAATAAACACACCCGCGCGTCTCGGGCCGTGTCCTGCTTGTCCTTCGTGGTGTCTGAAGAAGACAGGAAGTGGTGTTGCCAGTTCGGCTCCTACACAGAATGTGTTCAGCTGACCCTCTGGAAAgtgatgttttaa

Function

NR:

description
PREDICTED: syntaxin-1A-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005416 True 1287 mRNA 0.59 9 1342760 1359523

Neighbor

gene id symbol gene type direction distance location
AMCG00005412 NA coding upstream 20165 1321808 ~ 1322595 (+)
AMCG00005414 wbscr22 coding upstream 37688 1301037 ~ 1305072 (+)
AMCG00005415 LOC107573094,LOC107551239 coding upstream 47312 1284287 ~ 1295448 (+)
AMCG00005411 cux1,LOC105006988 coding upstream 84635 1255042 ~ 1258125 (+)
AMCG00005410 NA coding upstream 97885 1214157 ~ 1244875 (+)
AMCG00005413 kctd7 coding downstream 22218 1381741 ~ 1384590 (+)
AMCG00005424 LOC106567664 coding downstream 29165 1388688 ~ 1402701 (+)
AMCG00005425 NA coding downstream 43523 1403046 ~ 1406537 (+)
AMCG00005422 trim37,LOC103132205,LOC106941548 coding downstream 48910 1408433 ~ 1425336 (+)
AMCG00005423 NA coding downstream 109653 1469176 ~ 1480171 (+)
G152111 NA non-coding upstream 88801 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 285365 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 328380 1014078 ~ 1014380 (+)
G151978 NA non-coding upstream 651824 690659 ~ 690936 (+)
G151968 NA non-coding upstream 806068 535895 ~ 536692 (+)
G152196 NA non-coding downstream 98631 1458154 ~ 1458747 (+)
G152198 NA non-coding downstream 102201 1461724 ~ 1461939 (+)
G152397 NA non-coding downstream 895842 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1712427 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1824298 3183821 ~ 3186988 (+)
G151969 NA other upstream 805397 536751 ~ 537363 (+)
G151967 NA other upstream 942895 398925 ~ 399865 (+)
G152159 NA other downstream 7491 1367014 ~ 1367956 (+)
AMCG00005418 NA other downstream 16945 1376468 ~ 1379302 (+)
AMCG00005434 NA other downstream 149979 1509502 ~ 1517580 (+)
G152267 NA other downstream 386437 1745960 ~ 1748934 (+)
G152337 NA other downstream 440288 1799811 ~ 1803903 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014486 stx1b coding NC_007130.7 CM002903.2 5158306 ~ 5254699 (-)
grasscarp (Ctenopharyngodon idella) CI01000319_04643148_04656986 STX1A, STX1B coding CI01000319 null 4643011 ~ 4656986 (-)