AMCG00005418



Basic Information


Item Value
gene id AMCG00005418
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1376468 ~ 1379302 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00005418
ATGGCAGACGAGAAACTGAAGGTGGCGCGGGTGAAGCTGGTGAAGGGTCTGAACAGGGCGGTGCTCAACAACCTACTGGACCGTCTCCAGGATGCGAGGGTGTTCAACCCGTCGGAGGCAGAGTTGGTGCTTGAGGGCCGCAGCACCACTATGGAAAAGGCGCGGGGCTTGGTGGACATGGTGGTGAAGAAAGGGCCGGTGGCCAGCGAGATATTCTTCAGGTGCCTGGAGGAGGAAGACGCCATACTCCACAGCACTCTGAAGCTCTGA
>TU191589
TGCCATGTTTTAATCCTAATGTCCTCGCTGTGCCGTCCCTTCGCGCAGCCGCACGGCCTCCTTACAGTGCGAGTCCCGGTGCTGATTGGACAGGACAGGCAGGACAGGCAGGACGAGACTCCGGCGCAGCTCAGCTCAGTGTCTCGCAGGACTTTCTATGGGCCGGTGAACTGAAACTGAGCCCGAGTCGCCGTCGGACAGGGGGGTCATTTCTCCACCCACagctttcactttcattttcttgcaGGAGGAAACACTCCTCTGCGGATCCGGAGtcggtgctgtgtgtgtgaacctCTTTAACCAACATGGCAGACGAGAAACTGAAGGTGGCGCGGGTGAAGCTGGTGAAGGGTCTGAACAGGGCGGTGCTCAACAACCTACTGGACCGTCTCCAGGATGCGAGGGTGTTCAACCCGTCGGAGGCAGAGTTGGTGCTTGAGGGCCGCAGCACCACTATGGAAAAGGCGCGGGGCTTGGTGGACATGGTGGTGAAGAAAGGGCCGGTGGCCAGCGAGATATTCTTCAGGTGCCTGGAGGAGGAAGACGCCATACTCCACAGCACTCTGAAGCTCTGAGCCCAGTTCACACCGGTGACCAACACCTGGGAGACCACGCCTGCGCCCAGCGTGTTAAAGACACGGGCCGGTCTGCACAACATGGGCTGCTTCACGCTGCGTCTGGGCTGCAGAACAACAGAGCATTCCAGAGAAACCAGCACATCCACTGCCAGCCACAAGCACCCTCGAACCCAAATAGACCAGAAGAAGCTCATTTTGTACAACTGGCATTAAATCATTTTGTAGTACttcctttttaatcttttgtaataaatctttttttaagtaGAACATCTTGAA

Function


GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko05152 Tuberculosis
ko05310 Asthma
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05340 Primary immunodeficiency

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00005418 False 270 mRNA 0.59 2 1376776 1378884
TU191589 True 860 TUCP 0.55 3 1376468 1379302

Neighbor


gene id symbol gene type direction distance location
AMCG00005416 LOC108240947,LOC106533470 coding upstream 16945 1342760 ~ 1359523 (+)
AMCG00005412 NA coding upstream 53873 1321808 ~ 1322595 (+)
AMCG00005414 wbscr22 coding upstream 71396 1301037 ~ 1305072 (+)
AMCG00005415 LOC107573094,LOC107551239 coding upstream 81020 1284287 ~ 1295448 (+)
AMCG00005411 cux1,LOC105006988 coding upstream 118343 1255042 ~ 1258125 (+)
AMCG00005413 kctd7 coding downstream 2439 1381741 ~ 1384590 (+)
AMCG00005424 LOC106567664 coding downstream 9386 1388688 ~ 1402701 (+)
AMCG00005425 NA coding downstream 23744 1403046 ~ 1406537 (+)
AMCG00005422 trim37,LOC103132205,LOC106941548 coding downstream 29131 1408433 ~ 1425336 (+)
AMCG00005423 NA coding downstream 89874 1469176 ~ 1480171 (+)
G152111 NA non-coding upstream 122509 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 319073 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 362088 1014078 ~ 1014380 (+)
G151978 NA non-coding upstream 685532 690659 ~ 690936 (+)
G151968 NA non-coding upstream 839776 535895 ~ 536692 (+)
G152196 NA non-coding downstream 78852 1458154 ~ 1458747 (+)
G152198 NA non-coding downstream 82422 1461724 ~ 1461939 (+)
G152397 NA non-coding downstream 876063 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1692648 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1804519 3183821 ~ 3186988 (+)
G152159 NA other upstream 8512 1367014 ~ 1367956 (+)
G151969 NA other upstream 839105 536751 ~ 537363 (+)
G151967 NA other upstream 976603 398925 ~ 399865 (+)
AMCG00005434 NA other downstream 130200 1509502 ~ 1517580 (+)
G152267 NA other downstream 366658 1745960 ~ 1748934 (+)
G152337 NA other downstream 420509 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 550153 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 1124608 2503910 ~ 2510676 (+)

Expression



Co-expression Network