AMCG00005420


Basic Information

Item Value
gene id AMCG00005420
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1802917 ~ 1808080 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005420
ATGTGGCTTTTTAAGCGTCGGACCCATCGATACACAGTACTTTGTGCCAGTGCGAGCTCTTCTGGCTACCTTTTTCCTGTAGGTCGACTCAGGACGCAGCAGGACGGTCGAGTGCCAGGCTTCACGTCCGTGTGGGCCATCACCATGAAGCAGTTGGTGGTTTTCCTGAAGTGGCACCAGGGGTCCTTAAGAGTTTATGGGTCTCATTTACTCATCAGCCCCGGAAAGACAGTAATGAGTCTTAAAGCAGTCTTGTCCAGTGGTCCCCCCAACAACTCTCTGGACCTGTCAGGAATCCCACTGACCGCGAAGGACATGGAGAGGCTGAGCTCGTACCTGCAGAGCAACGCCGGCCGGGTGTCCAGCGTTGAGCTCTGTTTCACCGAACTGACGGACGAGGCcttcctgcagctgctgcccaCCTTGAGCGCCCTGCCCCTGCTCAACACGCTGTCCCTCAACGGCAACCGGCTCACCAAGGCTGTGCTGCGCGACCTCACCGACACCCTCAAGGACCCCGAGAAGTTCCCCAGCGTCACCTGGATCGACCTGGGCAACAACGTGGACATCTTCTGCCTGCCCCAGCCCTTCCTGGTGAGCCTGCGTAAGCGCTGCCCCAAACAAGGCCACCTGCCCACCATCCTGGAGTTCGGCGAGAGCCAGGTGAGCGACCTGGACAGCCACGACGGCAATCTCTCAGAGAGCCTGGACGACTTGGTCTCCGAGGAGGAgcaagagaaggagggagaggacagCTGTCCCACTGCGCCGCCCTCCCCCGACTCCGGCCTATCCCAGCTTCAGCCCTTGCCTAAGCAGTCAATGACAGATGAGACAGGGGATCACGTGGAGACCAGGGCAGCCAATCAGACTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005420 True 876 mRNA 0.60 4 1802917 1808080

Neighbor

gene id symbol gene type direction distance location
AMCG00005462 NA coding downstream 28466 1754913 ~ 1774451 (-)
AMCG00005460 NA coding downstream 95131 1697277 ~ 1707786 (-)
AMCG00005447 LOC106580668 coding downstream 117457 1675244 ~ 1685460 (-)
AMCG00005446 NA coding downstream 136552 1660027 ~ 1666365 (-)
AMCG00005445 fzd9,LOC106567714,LOC106612580,LOC107713270,LOC107691950,LOC107709816 coding downstream 165421 1635745 ~ 1637496 (-)
AMCG00005421 lrrc75a,LOC107585608,LOC107664947,LOC108278186,LOC106935686,LOC107690424,LOC107744770 coding upstream 31487 1839567 ~ 1857205 (-)
AMCG00005431 NA coding upstream 141141 1949221 ~ 1956060 (-)
AMCG00005488 NA coding upstream 249902 2057982 ~ 2059253 (-)
AMCG00005489 NA coding upstream 262285 2070365 ~ 2073296 (-)
AMCG00005533 NA coding upstream 409629 2217709 ~ 2222776 (-)
G152335 NA non-coding downstream 50179 1745953 ~ 1752738 (-)
G152320 NA non-coding downstream 109362 1692749 ~ 1693555 (-)
G152197 NA non-coding downstream 344255 1458237 ~ 1458662 (-)
G152178 NA non-coding downstream 404525 1397341 ~ 1398392 (-)
G152085 NA non-coding downstream 732261 1065459 ~ 1070656 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding upstream 132943 1941023 ~ 1946800 (-)
G152424 NA non-coding upstream 359524 2167604 ~ 2175954 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding upstream 486753 2294833 ~ 2318672 (-)
G152473 NA non-coding upstream 606992 2415072 ~ 2445097 (-)
G152652 NA non-coding upstream 1351977 3160057 ~ 3160364 (-)
AMCG00005461 eif4h other downstream 79417 1708683 ~ 1723500 (-)
G152271 NA other downstream 187420 1521742 ~ 1615497 (-)
G152277 NA other downstream 295289 1505940 ~ 1507628 (-)
AMCG00005419 NA other downstream 426444 1371342 ~ 1376473 (-)
G152133 NA other downstream 467477 1219327 ~ 1335440 (-)
AMCG00005532 NA other upstream 389274 2197354 ~ 2329684 (-)
AMCG00005517 NA other upstream 598445 2406525 ~ 2410247 (-)
AMCG00005491 supt6h,LOC107603297 other upstream 1064426 2872506 ~ 2890448 (-)
G152645 NA other upstream 1263780 3071860 ~ 3090714 (-)
AMCG00005525 LOC106567758 other upstream 1798881 3606961 ~ 3632712 (-)

Expression


Co-expression Network