AMCG00005422 (trim37,LOC103132205,LOC106941548)


Basic Information

Item Value
gene id AMCG00005422
gene name trim37,LOC103132205,LOC106941548
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1408433 ~ 1425336 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005422
ACGGTTTCCAATAGTGACAGGCggcggagagagggagagagagagagagagagagagagagagagagggggatagaGGGAAATGGCAGCGGCGGCGAGGAGCGACTGTAAATAACAGACCCCGCAATCACAAGCCCCCGGACCGCGGGCCCAGCTGCCGAGCTCCGGAGCGGGGGGCTGGTGGCCGGCGCTCCGCCCTGCTGTTCCTCCGCAGCGCTGCGGCTGCCCACCCGCTGCGGACGGAGCTCCGCGCACGACGTATTTTGCAGTCTCTGATTACTGCCGCGATTGTAGACAAGCTGTGCGTCCTCATCTTGAAGGAAGTTTCCTAATTGctgGTCCTGAGCATCCCTCGCTCTTCCCTGCATCTCTCCCAGACGGGTAAAGCTGGCCGACATGGATGAACAGAGCGTCGAGAGTATTGCAGAGGTCTTCCGCTGCTTCATCTGCATGGAGAAGCTGCGAGACGCACGGCTCTGTCCTCACTGCTCCAAACTCTGCTGCTTCAGCTGCATACGGcgctggctgaCAGAGCAGAGGGCTCAGTGTCCGCACTGCCGGGCGCCGCTGCAGCTGAGGGAGCTGGTGAACTGCCGCTGGGCAGAGGAGGTGACCCAGCAGCTGGACACGCTGCAGCTGTGCAACCTGTCGAAGCACGAGGAGAACGACAAGGACAAGTGTGAGAACCACCATGAGAAGCTCAGCGTGTTCTGCTGGACCTGCAAGAAGTGCATCTGCCACCAGTGTGCCCTGTGGGGGGGAATGCACGGTGGCCACACCTTCAAGCCGTTGGCAGAGATCTACGAGCAGCACGTGACCAAGGTGAACGAGGAGGTGGCCAAGCTGCGGCGCCGGCTCATGGAGCTCATCAGCCTGGTGCAGGAAGTGTGCCGGGCCGTGCCGGCCGCTCACCGCACCATCTCGCTTGTGTTGCAGGAGCGCAACGTGGAGGCCGTGCGGGGGGCGAAGGACGAACGCGTCCGGGAGATCCGCAACGCCGTGGAGATGATGATCGCCCGGCTGGACAACCAGCTCAAGAACAAGCTCATCACGCTCATGGGGCAGAAGACTTCACTGACGCAGGAGACGGAGCTGCTCGAGTCGCTGCTGCAGGAGGTGGAGCATCAGctgcGCTCCTGCAGTAAGAGTGAGCTGATCTCCAAGAGCCCCGAGATCCTGCTCATGTTCCAGCAGGTGCACCGCAAGCCCATGGCCTCCTTCGTCACCACGCCCGTGCCCCCGGACTTCACCAGCGAGCTCGTCCCCGCCTATGACTCCAGCACGTTCGTCTTGGCGAATTTCAGCACCCTGAGGCAGAGGGCCGACCCGGTGTACAGCCCGCCTCTGCAGATCTCCGGCCTGTGTTGGAGACTCAAGGTTTATCCTgACGGCAATGGAGTGGTGCGTGGGAACTACCTCTCGGTCTTCCTGGAGCTGTCGGCGGGACTCCCCGAGACTTCCAAGTACGAGTACCGGGTGGAGATGGTGCACCAGGCCTCCAGCGACCCCACCAAGAACATCATCCGTGAGTTCGCCTCCGACTTCGAGGTGGGCGAGTGCTGGGGCTACAATCGCTTTTTCCGCCTCGACCTGCTGGCCAGCGAGGGCTACCTCAACATGCAGAGCGACACGCTGGTGCTCAGATACCAGGTGCGCTCCCCCACGTTCTTCCAGAAGTGCAGAGACCAGTACTGGTACATCAGCCAGCTGGAAGCGGCTCAGACCAGCTACATCCAGCAGATCAACAACCTGAAGGAGAGGCTGGCCATCGAGCTCTTCCGCCGGCAGAAGTCGCGTAGCTCGTCCCCCCCCGACCGCCGGTTGTGCGCCTCGGCCTCGGACAGGGACGTGCGGCCCGGGAAGGGCGCCGTGGCCGAGGAGAGCGGCCAGGCTGGGGCTGGAGAGGTGAAGGAGgtggcggaggaggaggaggaagaggaggagcaggaggaggagaagaccCAGCAGGATGACTCCAACGACCTGTCCGACGGGGACCTGGAGGTGGACTGCCTGACCGGGGACGAAGAGGCCAATCCTCTGGATGGGAGCAGCACCTCCGGCAGCTCCACCGCCACCAGCAACACGGAGGAGAACGACATCGACGAGGAGACAATAGGAGCCGGGCGTCCCCTCACCCTGGTTGTCCTCGAGTGCCCTGTGCTGACACAGAATCTGCGTCACCGGGGCTCCGAGAGCGTCGCCTGCCAGGAGTGTCAGAGTATCTTAACGTTGCCGGGGATGTCGGGGACGTGGCTGGTTATGATTTCGGCCTTTCGAGAGTCTGGAGAGAACGATGTGGAGTACAGTGGCAACCTCGAGATGGAGGAGGGGGAGCTGCCGGAAGACGTGGCTGGGGCAGCAGGCGGGTCAAACCCTGGCGCGCGACCCCTGAGGCGCGGGGGGGCGGGCGGCCTGTCCTCGGCCACCAGCAGCAGCCTGTTGGAGATCGACCCGGTAATCCTGATTCAGCTGCTGGACCTGAAGGAGCGCGGCAGCGTGGAGTCCCTGTGGGGGCTGCAGCCGCGGCCCCCTGGCTCCCTGCTGCACAGCACGGTTCAAGCCCACTCCCGGAAGGAGCGCGAGCGCCGGCCGCAGGCAGTGCGCCGGTCAGCCCCTGATTCGGGGGTCCTGATCCGGCTCAAGGCCCAGATGGCAGAGGTGCGCAGCAAGATGTCGGACGTGAAGTGCCAGCTGGAGGCGCGGGGTGGGGCGCTGCCCGGCGCGGGGGAGTCCAGGGCTGGGCCCTCGGGGAGCCTGGTGGAGCAGGGCCCCGCCGCGGACTCAGACGCCCCGTCCTGCAGGAAGCCGAACGAACTGGACCTGCTGGGCAAGGCCCTGGCGTCGGGGCGACACTGCCGCAGCGCGTCCGGCAAGAAGGGCGTGTCCCCGAAGCAGGAGgccggggggccggggggccTGGCCCTGCGCCGCTCTGTGGACTGTGTGGACAGGGAGGCTCGAGCGCAGGGGGACGGCGAGGCGCGGGCATGCCCGGGGGACGCCGGGACCGGTGCGGAAGCCGGCCCGAAGCCCCGCACCGTGTACAGCTCCCCGCCCTGCCTGGGCAGCGCCAGCTCTGCCGACAAGCCATCGAGCTCCAAGATGGAGGAGCCGACCTACGGAGCCGCCGGCACCGACCTCCTGGGCCTCTCGGGCCTCAATGGGATCCTGCCGATAGGCAAAACCCGCCGGGTCCCCACCATGGGgGCGGGGCTGCTGACGGACGGCAGTCTGGATTGTGACCCAGAAGGGACCAGTGAGATCCGGCAGTCGCTGCTCGCCCTGTCTGAGGGAAGCGCCTCCCGGCCCGACGAAGGGCTGCTGTGCCAGAAGCAGGTGCTGCACCTCCTCCCCGGCATGAGCAGCGACTCGGAGATCGAGTGCGACACAGAGAACGAGGACGACGCCGTGGCCCTGGAGGCGGGGGACTGCCGCTACAACGCCCGGATGCTGCCCGGCACAGGGGACCAGCTGAGCTCCGACGACCTGAGCTTCACCGCCGGGGAGGCGACCGAGAGGTGATTCCCCCCCGACGCCATCGCCCCGTGCTGCTGCGGACAACGTGCCGACGGCtcccttccgcttcctgtcCGCCTGCCCCGGCGCAGAGACTCGCATGCAGCTTCCTCATCGTCACGCCCGTCGCTCAAGGTCAACGTCTGGGGGGAGAGGGGGTTGCACAGATGTATAAACGCTAAGTGTCACCGTGTCGCTCATATTGACTCTGTAGTTACGTGTGAATTCtacggggggaggggggggacaaACCTAACAAACTGTGTGGTGAGACGGTGCTCGGACACGCAGAACCACCTCACCGGAGAGGCGGCGGCGCCCGTTGATCTGCTTCCTCTCTGCTTTCAACACTAATCCCCTCTCGCCGGCACAGACTCtccttttaacctttttttcttgtaaatttAAGTGGATGACCGTGATTCTTAAGTGTGTGTGGATAGAAGTCTGCTCTGAActcgtgtgtttgttttgtttcttttccttgttttgttgttgttttgtttggctcTACCGGAGCAGAGGCGCACGTTGAGGAGTTGCAGTcggtttaatttgcatttcctCGCTGCATAACAACTGAACAGGTTGATGATCACTCGAGTCTTATTCCCGGCCCGTTTACACCATATTACAGCCTGTAGATGGACCGGGGAGGACGGCTGCATGTCTGATTTGATTGATCAGTCTGCTCCGTAATGAAACACTGGCGGTGCCGATCAAgatgcatttatgttttatggAGACGCCCGCTGAATCCATAAAGCGGGATCATCCGGCGGGAGGCGCGGGGTGCCGGGGCCTGAACGCACCGCCGCGCTCTGCCCTTAATGCGAACGAGAATCAGGAGATGTAactttgtataatttataatctAATTTATTGAGCGCTCTGTGGAGAACTACTGTGTGCATCTCCTCTGACTGAGACGAGCAGTTCAAGACGCTCTGGCTTTACTTCCCTCTTCTCACTGTTTTTCCGCTGTCTTGGGAGTGGCACAGCCCTGCCCGTCCTCCCTCTCACTGGGAACCCCCCCACCATACTGGCTGTGCTGAAGGGGACCCACGCATGCTGgcctgtttatttgtattcttaaaaGGCTCTGGCCGGGACCATGCTTTACGTGTTTACCGTCCTCCTGCGTGAGAGTCGATAACAGATCCGTCTCAGTCCTCAggacaaatgtgtttaatttaaacccCTCCCTCTCGAGTGACAGAACGCCACTAAACTGACTCTGGATTTGAAAACTAACTcgatcttttattttttctctcgtGTGGTTTTATGGTCGTCCTTGGTTTCCCTCATTCTGGAACACAAATGCGTTTTTGCTTTTACTTAGAGCTTAAACTCTCCGTTAGACACTCGGCTGTTTGCCCTGCCCACTGTAGGCTCAATGTGGCCCAATTTCTGATCCAGTCTGGGCCTCCTTCCCCGGCCTGACGCTCACAATGGGAGGTTCGGAGGCCATGGGGGGTGAAACCGGTGCATGCGGTCCCTGTGCCTCGATGTGCCTGAAATGTGCACGGCTGCTATTTGAACTagaggagaggggaaggggagagtcatgctggaaaaataataagttgAAAGTGCTCATGATTTTGAAATCTGAAGTGCTCTGTGGAAATGTAATGCATCACTGCGGTCTTTAAAAGCATTCTCCCCTCGGCCCCCGTGCTCGCACCCCTCCGAGGATGCTCTGTTCGCGCGCGCGTACATGTGGCCCGATCTCAGTGgcactgattttaattttacccAGGCCTTCATCGCTGCTGTGCGTTCGTCCCACTGGCGTGTTCAGACCCCCGCTCTGAGCCTGGCGCCCCCCCCGCAGTCACGCTGTGAGATGATTTTCTGCAGTCCCGTGTTTGTATATGTctgtaggtatgtatgtatataaatataaatctctAAGCAACTGTcagtgtttttggttttaaaatgctctGTCAGGACGTTGTTGGAACTgtgcaattgtttttgttttgtaaataactaacaaaatactaaatgaacaaataaaatgtttactttttcttgaaa

Function

symbol description
trim37 Predicted to enable tumor necrosis factor receptor binding activity; ubiquitin protein ligase activity; and ubiquitin protein ligase binding activity. Predicted to be involved in negative regulation of centriole replication; protein ubiquitination; and regulation of DNA-binding transcription factor activity. Predicted to act upstream of or within protein ubiquitination. Predicted to be active in aggresome and peroxisome. Human ortholog(s) of this gene implicated in mulibrey nanism. Orthologous to human TRIM37 (tripartite motif containing 37).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM37

GO: NA

KEGG:

id description
K10608 TRIM37, MUL; tripartite motif-containing protein 37

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005422 True 5567 mRNA 0.60 27 1408433 1425336

Neighbor

gene id symbol gene type direction distance location
AMCG00005425 NA coding upstream 1896 1403046 ~ 1406537 (+)
AMCG00005424 LOC106567664 coding upstream 5732 1388688 ~ 1402701 (+)
AMCG00005413 kctd7 coding upstream 23843 1381741 ~ 1384590 (+)
AMCG00005416 LOC108240947,LOC106533470 coding upstream 48910 1342760 ~ 1359523 (+)
AMCG00005412 NA coding upstream 85838 1321808 ~ 1322595 (+)
AMCG00005423 NA coding downstream 43840 1469176 ~ 1480171 (+)
AMCG00005437 NA coding downstream 60877 1486213 ~ 1490622 (+)
AMCG00005436 smg8 coding downstream 66135 1491471 ~ 1496565 (+)
AMCG00005435 NA coding downstream 71516 1496852 ~ 1506717 (+)
AMCG00005432 NA coding downstream 132504 1557840 ~ 1567204 (+)
G152111 NA non-coding upstream 154474 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 351038 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 394053 1014078 ~ 1014380 (+)
G151978 NA non-coding upstream 717497 690659 ~ 690936 (+)
G151968 NA non-coding upstream 871741 535895 ~ 536692 (+)
G152196 NA non-coding downstream 32818 1458154 ~ 1458747 (+)
G152198 NA non-coding downstream 36388 1461724 ~ 1461939 (+)
G152397 NA non-coding downstream 830029 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1646614 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1758485 3183821 ~ 3186988 (+)
AMCG00005418 NA other upstream 29131 1376468 ~ 1379302 (+)
G152159 NA other upstream 40477 1367014 ~ 1367956 (+)
G151969 NA other upstream 871070 536751 ~ 537363 (+)
G151967 NA other upstream 1008568 398925 ~ 399865 (+)
AMCG00005434 NA other downstream 84166 1509502 ~ 1517580 (+)
G152267 NA other downstream 320624 1745960 ~ 1748934 (+)
G152337 NA other downstream 374475 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 504119 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 1078574 2503910 ~ 2510676 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002872 trim37 coding NC_007121.7 CM002894.2 32809620 ~ 32851847 (-)