AMCG00005423


Basic Information

Item Value
gene id AMCG00005423
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1469176 ~ 1480171 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005423
ATGACCGGGGTTTCGAGTCTGACGTCAGCGCGGTGGGCGTGGCGTGAGCTGGCGAACTGGTCGCAGAGGCCCTCGGGTGTCTGTGTTAATACACACATCCATACGATGGCTCAGAGCGGAGGGGCCCCGGTGCCCTGCCCGGTGCGGCTGGGCCGGGTGATCGCCGACGGCGCGGCGGCGCAACTGCACGGGTTTGCCCTGGAGAGGAACACCCACAAGCTGGAGAAGCTGCTGAAGAGAGGCGTGGACGTGGACGTCATCAACAACCTGGGCCAGACGCCTCTCTTCTGCGCCGCTCTCCTGGGCCTCACCGGCGCCgcagagctgctgctggagtTCGGCGCCGACCCCAACCACGCGCTGCTGGACGCGGGGGGGGACCTGCGGCTGCACGACGCACAGGGACGCACCCCCGAGGACTGGGCCCAGGCGGGGGCACAGGAGCACAGCCCCCGGATGCTGAGCTTCCTGCAGCGCTGCGTGGCCCACATGCAGACGCTCACCCAGCAGAGCTCGGCCCGAGACCCGCGCCAGACCGGCGGCTCCTGCAAGGCCCTGCTGCCCTCGCCCACCCTGCTGGAGCGCCTCAAACCGGGCAGCCCTGACTACCACGTGACCAGAAGGACGAGCAGCAAGCCCCCGGCCTTGGACCTGCGGCAGTGCTTTGGCTTTGGGCAGCTGTGCGCCGCCAGGCCGAGGCAGCGCCTGGACTTCTTGGCCGGTCTGCCGCTGATCGAGGAGCGGGAGCTGCAGCAGGCCGAGTACGAGCCCCTCCTGTCACACTCTTGTGGCTCCTACATGACCATGACCAATTACAGCTGGAAGGGGTGCCGGGTGACGGTGAAGGAGCTGCAGCCCCAGGGTGCCCTGCTGCGCGGCCCTAAGGGTGGCTCTCTGGACTGGCTGATCGCAGAGCAGGAGCACTGCAGCCGGCTGCTCCACCCCcacctcctgcagctgctgggtGTCGGCGTGTCCCCGGACCTGCAGACGACACGCCTGGTGTTTGAGAGAGTGTACATCGGTTCCCTGTACAGCGTCCTGCACCTCAGGGGGGCTCTGCTGGGCGTGGCGCTGCAGGTGTGCGGTGCTCTGCTCTTCCTGCACGGCCGCAGCCTGGTGATGCGCTCGCTCTCCTCCCACGCCGTGCAGCTCGTTCGCCCCGGGGTCGCCAAGCTCACCGGGCTGCACTGCCTGGCGTGCAGTGACGGTGATGCCCGGGGGGACTCTGCTGACCCGGTGCTGCCGCTGGACCTGTACAACTGGGCCGCCCCTGAGGCCATCCGAGGGAGACCCTGCACCAGCAAGGCTGACCTCTACAGCATGTGTGCcctcctgcaggagctgttcacagACGCTGTGCCCTGGGGGGTGGCGGAGCCCCGCGCTATCAGGCACGTGGTGGAGTGCGGCCACGCCCTGCAGCCCGACCCCCGGGTGCCCACGCCCTACTACGAGCTGCTGAGGAGCGGCCTGCAGCCCCGAGCCCAGCACCGGACCCCCAGCCTGCGGGACCTGCGCCTGCAGCTGCACAGCGACGTCAAGgtgcccccccgccccactcTCGCCCCTCGCGGTGGTGCCAATGGGGGCTGTGATGTAAGGGtgctgcactctctctctcctgaccAGGGCCTGTGCCAACATGGGGGGCAGCGGTACGGGCTGTGCCCAGAGACAGAGCTGCTGTGGGGGCTGGAGACGTGGCAGGACCTGGAGCAGACTGGCCAGCGCCCGTATGTCCTGCCCCCGGACCCTGGCACCTCGGACTCGGACAGCTGTCTGGGCCCTGAGGGAACCGTGACCTGGGAcgagatggagagggagggagccccggccccggccccggcccAGAGGGACGACAGGTTTTTCGATGCGGTCAGCGCCATCATGCTGGACCTGAAGGTGTCCCAGGTGCTGGTGCAGCAGGCAGAGAACAGCCTGCTTAACGTGGAGAGGGCCCAGGCTGCCAGGGCCCGGGCCGCGAGGGCCCTGCTCGGTCAGTCCAGGGCATTGGGGCCCCTGAGGTCTCGCTACTGTCTCCCCGTAGATGAAGACAACCCCATCAGCGAGGAGACAGAGCTGTTCCTGCAGAACTATCTGCTCTCTCACTGGCAGGATGAGCCGAGTGCCGGGGAGGGGCCCAGCAGCTACAGCTCCGCCCTGGACGCCAGCTTTGCCACCCCGAGGGCCACACACAGCCAGGCAGGCAGAGGAGGTGTAGTGACAACAGGCCAGTACTGCCACAGAGAGCAGCCCTCCGTCTCCCGGCTGGACACTGAGGACAGACGTGCAGAGCCGGCACAGAGAGGATGCACTCCTGCCAGCAGCCGGCACAAGGTCCCGGGGTCTGCTGCCGCCACTAACTGGAAACGGGAGGTGTCGGAGGTGGTGGAGAGGATGGTCAGTGGGCTCTTGGGGGCAGGGGGCCGCACACCCAGCAGCCAAAGCCAGGGCACAGAGGAGAGGGTGGCCCCCGAGCAGGAGGCCCGGGGGTCCTGGAGGCAAGACCCCCACGACCCACCGCAGCGCCAGGGATCACCGCCGGCCAGCAGCACCGAGCCAGAGCGCCTGTTCAAGAGCTTCGCAGGTGTCCAGAGCGAGAGCGAGGAGGACGCCCAGTTCCTCTCCGTCAACAGGACGTTTGACCTCAGTGCTGGACGCCTGGAACGCAGGGGCCCCGCGGAGGAGGACAGCAGCTCAGAGACGGACGACACAGTGTCTCCGGCCGAGGTGTCTCTGGGCGAGGTGACGGAGGAGTTCTttaccccccgccccccagggAGTCGCACACAGgtaggggGAGCCCAGGCCACAGAGGAGAAGCCAGCTGACGGAGAGGGGCCCGCTGCCCCCCCGGGCGTCTCTTCACCGGCTGGGGGCTGCCTGCCTGACATCACTGAGCTGTCCAGCATCGCCTGTGAGGAGGACTGGTCCGGCAGACAGACACTGGGCCGACTCGCCCCGTCCACCCGTGTCAGCACGCCGCGCAGCCCAGGAGCAGCGCGCTCCCCCTCGTCCAGGCCAGTAGGGGGCGATGTGGCACCACTGCAGAGCCTACTGGACACGTCTCCCTGGAGCAGCCGAGTCACATCCGAGGCCTTCAACACGGCCCCCTCCGGCACCATCGGCATCAGCGACCCCTCAGTGTCCGGAGTCCTGCCTTCGCCCCGGCTGGGAAACGCTCACACACGCTCTGACCGCAGAGAGACGGAGGCGCCTGGGGGGGGTACATGGACTCCAGGGCCACAAGAGGAACGGGGCGGTGCCGGCGGTGCCAGGGGGGCGCACTTCAGTGACACGGACAGCACGGCAGAGAGTGACACGGCGGGGGAGTCCCCAGATGATGATGAGGTCGGCAGGGGGGCGGCGATGGTGCCAGGTGACAGAGTGGCCGTGACAGCGGCTCCTGGGGATGAGAGAGCCAAGGGCCCCGGGTGCCACGGCCCCGTTGCTTGGTCAGTGGAGGCCCCTGCTCCAGCAGACTGTCCCCAACTGGGAGaAGCCAGTCTTGTTGCAGTGCCTGAGGAGCTGAGGAGGTTGGAGCCCCCCGGGGACGAGCAGGCAGCAGGACAGGGCTGGCCAGAGGAGATGGACAGAGCTCACTCCACCCTGGACGAGGCGCTGCAGGGCATGCTGGGAGAGCGAGACAGTGATGAGCCGGCAATGAGCAGCACGGGCCCCGAGACATCGGAGAGCAAGGGCAGCGAGGGGGCGGCTCTGCGAGACGAGGACACGGCCGAGACGCGTGAGAAGCCGGGACAGCAGGGCAGCAGCGCAATGCCCGGCGAAGCAGCTGACCCGAAGGAGCAGGGCGAGGGACGCGAGCCGGCTCAGAGAGGGCCCTGGAGCCACACCGCGCCACACAGGTACCACACCCCCTGCCCGTGTCACCTGTCTGGAGCCACAGCAGGTGTTTCCAGCCGGGGAAGCAGGACTAGTGCACTTCTCTGGTGTCTCCCCCAGACGGATCATCCTGGAGCAGACGCCGACCAAGTGCCAGAGCGACCCGGGCCCGGCCCTGGCCCCGACCCCAGAACGCGCCACGGAAAGCGTGCACTAGCTCTGGCCATAGAGGCAGCGCCGGTGGGCCTGCAGCCAAACAGCtgagttttatgttttaaagtgaTTAGTTAGTTCCTGTGTATTGTAACGGGACGGGGTTCTGGTCCCGTGTGGGTGGCTCGGCTCGTGTTCCTGatttaaaggttaaataaagTTTCAGTTCAGACA

Function

GO: NA

KEGG:

id description
K17540 TEX14, SGK307; inactive serine/threonine-protein kinase TEX14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005423 True 4233 mRNA 0.68 27 1469176 1480171

Neighbor

gene id symbol gene type direction distance location
AMCG00005422 trim37,LOC103132205,LOC106941548 coding upstream 43840 1408433 ~ 1425336 (+)
AMCG00005425 NA coding upstream 62639 1403046 ~ 1406537 (+)
AMCG00005424 LOC106567664 coding upstream 66475 1388688 ~ 1402701 (+)
AMCG00005413 kctd7 coding upstream 84586 1381741 ~ 1384590 (+)
AMCG00005416 LOC108240947,LOC106533470 coding upstream 109653 1342760 ~ 1359523 (+)
AMCG00005437 NA coding downstream 6042 1486213 ~ 1490622 (+)
AMCG00005436 smg8 coding downstream 11300 1491471 ~ 1496565 (+)
AMCG00005435 NA coding downstream 16681 1496852 ~ 1506717 (+)
AMCG00005432 NA coding downstream 77669 1557840 ~ 1567204 (+)
AMCG00005433 NA coding downstream 93467 1573638 ~ 1578641 (+)
G152198 NA non-coding upstream 7237 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 10429 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 215217 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 411781 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 454796 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 775194 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1591779 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1703650 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1719161 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1780039 3260210 ~ 3260429 (+)
AMCG00005418 NA other upstream 89874 1376468 ~ 1379302 (+)
G152159 NA other upstream 101220 1367014 ~ 1367956 (+)
G151969 NA other upstream 931813 536751 ~ 537363 (+)
G151967 NA other upstream 1069311 398925 ~ 399865 (+)
AMCG00005434 NA other downstream 29331 1509502 ~ 1517580 (+)
G152267 NA other downstream 265789 1745960 ~ 1748934 (+)
G152337 NA other downstream 319640 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 449284 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 1023739 2503910 ~ 2510676 (+)

Expression


Co-expression Network