AMCG00005424 (LOC106567664)


Basic Information

Item Value
gene id AMCG00005424
gene name LOC106567664
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1388688 ~ 1402701 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005424
CGCccggggagggagagaggaagggacgGAGGGAGAGGAGTAAACAGACTCGGAGGCGGCTGGCGCTGGCAGGACGACCCGGCCAGAGCGGAGCAAAGCGACCGGGACGACGAGCTAGGGAGACCCGGACACAGCAGGAATAATGAGCCAGAAAGCGGAGCGCCGGGGGATCCACGTGGACCAGTCTGAGCTGCTCTGCAAGAAAGGATGCGGATACTACGGAAACCCCGGCTGGCAGGGGTTCTGCTCCAAGTGCTGGCGGGAGGAGTACCAGCGGGCCCGGCAGAAGCAGATCCAGGAGGACTGGGCGCTGGCCGAGAGGCTGCAGCGCGAGGAAGAGGCTGCCTACGCCAGCAGCCAGGGGGCGCAGTCCCAGCCTTCGCTCACCACCTTCTCCAAGTTTGAGGAGAAGAAGACCAATGAGAAGACGCGCAAGGTCACCACCGTGAAGAAGTTCTTCAGCCCGTCATCGCGCACGGGCCCCAAGAAAGGTattgtgggtggggggggcaaaCTCGGTCTGTCTGCACAGCTGCCTCCAGCAACCTTTTAACCCCGTTCCCCTGCGTGCCAGGACGTCTACTGTCAGACTCCCCGTGTCTCCTCCCAGATGCTTGACCTCGTCGGTGAGATGTTTCTCCCTCAGGTTCACcgaagaatgtattttattctcatTTTAAATCCTGTAGTTCTGTGGAAAGGTTTACTAATCAGAGCTGCTTATAAGATGACTGTGAAGTCTCGGTATCCCCGAAAGGTCACTGGCGCCAGCAGGCCGGTGTTCATGGGAAACAGTCGAGTCCCCGCCCCGCATCATGGGATATGCTGGcctgggagggggggggtgctAAATGGAAGCCCAGGTTGATGGGCGTCTGCCACCCGTGCAGGTCCTCTATGCTGAACCTCCACAGTGAACCCTGACCCCTGACGAGTGCCTCTGGCTCCTTGGGTGCGGACTCTGGTCGACCCGGTCCGGTCTCGGAGTGTGGCTGCGTgctcctcccccccccctccatgcTGTCGCTTACTCTCACTTGTACACACTCCCCCCCTTCACCGCCACCCTTACCCCCACATCTGAACCCCTCTAAGCCTCATCAGTTTTCCATACAGAGTGGGCTGTCGGCACGAGACCCCCATGGCTTTGTTTTAAACACCCAACTTCCTGTTTGGGCCTCTAGCATTCCCGGAGCTTTGGCTTGAGTTAGTGTTTACAGGTTGCTGTATGTCTGGGAATAGGGCGATCTATAGGAGCTTATTTAGGATACATACAACGCTGTTGTTGAACACCGCAGCCTCTGTGAGGCGAGAGCTGACGTCAGTGTGTCGAGGCGCCGCCTGCGACCTGAAGGAACCCTGAGAGGAGACGTCCCTCACGTGCCTGGCCAGAGCGCCCAGACACTCCCTCTCTGTATGGAAACCAGCGAGGCCCCATGCACCCCCGCACCCCCCCAGGATTCGTTTGTTcgtctgttttgtttatttttcagtccGAGTAACAGTGATTCATTCGAGTCTCTTCTCATTTCTTTTGCCCCCCCAATCTCCTTTTTCTCTGTTTACTCCCACCCATCAATCTGTAtgaacataacaaaataatcaatcCTCCTGTCCTCCACCTTCTCTGCACTCATCCCTATTCCTCTCATCCCTGCTCACTCACGCCCCCCTGTCACGCCCTGtatccctcccccccacccgaCCCCCTGACCCCGTCCGGGTTCGTTACAGCACCCCCTGAGAAAGTCGGGAAGGGGCCGAGCGGGAGGGAACGCCCCGCTGAGAACCTCCTCAGGGACCTGCGGGAGATTTTTACCCCCCCCTGGGAACTGGCGTCCCCTACAGAAGAGAGCCAGGAAGCCAAGACGCCCAGTCCGTCCATCAGCCGGCAGGCAAGCCTGGAGACGGACCGCGTGTCCCGGGACTTCCAGGAATTCCTGAAGAACCTGAAGCCGGGACGCGAGATCCTCAAGCAGTGCCGCGTCTTCATCGACGGCATGGCCAACAAGAAGGACCTCAGTGCGGAGGAGCTGTCCGAGTGCGTGCAGGACTTCTACCAGAACATGGCGGACCGGCTGCATTCGCACTTCAAAGGGTCCTCGGAACGCGTGGAGCGAGTGATGGACCAGGTGGAGCGCTACATTATGACCCGGCTGTACAAGAACGTGTTCTGTCCTGAGACCACGGACGACGAGAGGAAGGACCTGGCCGTGCAGAAGCGCATCCGAGCGCTGCACTGGGTCACCATCCAGATGCTGTGTGTCCCGGTCGACGAGGAGATCCCCGAGGTGTCTGATAACGTGGTGAAGGCCATCACAGACATCATCGAGATGGACTCGAAGCACGTGCCCAAGGAGAAGCTGGGCTGCATCACGCGCTGCAGCAAGCACATCTTCAACGCCATCAAGATCACCAAGAGCGAGCCGGCGTCGGCCGACGACTTCCTGCCCACCCTGATCTACATCGTGCTGAAGGCCAACCCGCCGCGGCTGCAGTCCAACATCCAGTACGTGACGCGCTTCTGCAACCCCAGCCGGCTGATGACCGGGGAGGACGGGTACTACTTCACCAACCTGTGCTGCGCCGTGGCCTTCATTGAGAAGCTGGATGCCCAGTCTCTGAACCTGAGCCCCGAGGACTTCGAGCGCTACATGTCGGGCCAGGCGTCGCCGCGCCGGCAGGAGCCCGAGGCCTGGCCCCCGGAGCCCTGCGGCAGCCCGGCGCTCGGCCAGGTCTACCAGAGCCTGGAGCTGCTGTCGGGGCTGGGGGGCCGGCAGGAGCGCGTGCTGGAGGGGGCCCGGCGGCTGGAGAGCGACCTGATCGACTGGCGCGAGGGCGTGGAGCGTGAGGTGCGGGACATCCTGGACAGATACCCGCTGGACATCCGGCCACCTGCCTCCGCCATCGACTCCGACAACGTGGAGAACGACCGCCTGCCCCCCCCGCTGCAGCCGCAGGTCTTCGCTGGCTagaccccccgccccccaaccCCAAATGGACCGGTCCCCAGTTCCCTGTCCCGTCCCTCTCGCACCCCCCGGTCCGTGCGCTGCAGCCCGGGGGACGGTCTCAGACAGCTCGGCTCTCCTCTCCATTAAAGCAGCCCGGCAGCCTCCCTGCCTGCGGACAAGGTGCCCCCCGCGCCCCCCGGGTAACAAACGGTCGCCAGACCCCCGGCCCACGGGCCACTCTACTGTACTGAGCCGCCGGCTGAATACGCTGAGAGTCGGACATCCACCTCCAACCAAAGTCTTACACCCCGAGTCCGTGTCTGTCTGTATAACCTCATCTTCACTTTAAGCAGGTCTCCAGTCCCGTCCCCCCGTGTCCTCATAACAATGAGTGTCATAGGAGTAGTTGTGTGACTCGAGACGCGACACTCGAACACACTACGCTGGGCGGGGGGATCGCCCTTCTTCAGCCAGGGGTTAAAGACAGGTTTCGTTATTGTTTTTAGTGTCTGAACTGTATTCACAGCTGGGTGTCCGTGGGGGAAACTTCCTTTTCCTAAAGAGGCGAAAATGCAATCGACCCCAGTCCGCTCATTGTAGAGGATGATCGTTAAAGAAAACTCATCATTAATGAAGCaacttgattttaaaaagccaaCTTTCCGGGAGATGAGGTTTGTCTTCCCGCTGGGTCGTGAGGGGAGGCGTGCTGCTCGGCTCGGGCCAGGAGAGTTTGGCCCGGTTGGCACCGTGCCCCATCTGGGCCCGTCCACTCGCCTGCCCCCCCAGGCTGAGGGGCTCGTTTGCATTTTACTGGATCAGGTTTGAAATCTTCGTAGAGAAGCTGAAGTTgccttctttttttgttgttgttctttagtttttgctccttgtttgttctgttctgcTGGGCCGAGCGTTTCCTCCCTGTACTCGCGTATGAAGCATTAATTATCATGACTAACAGGAAGAGAGCTGCAGTGGGGTTCCGTGCTGAATCGCTTTTTATTTGATGTGCATTTCTGGTTTCGATTGGGAATCGGGACGGGTCTTTGAAGGCGAGCGCCCTGTCGCTACAAACACTACGAGCCCCCCACTCCGGTCCAGTGCCGCTCGGTCAGGGCCCCCCCCGTCACCGGCCCCCTGCCTGGTGCAGTGGCACTTTTAGGCCTACAGTTAAACCAAGATACCCTCCATCTCCGAGTCCAAGCACTATCCCGGGGTCTGTCAGGCAGCTGTGGATGAAATTTCTATAGATGTGTAAATCGTATTTTCATGTTTGAGTTCTGCTGTGTGGCGTCTCCTTGTGAGCTACAGAGCGGAAAGGAAGAAAACACCCGAAAACACTCCAAACCCGGCCGTGCTCTGGCCTTCTGGGGGCTGTATAGTGTGTCCCCGTCCGAGTCCCTGCTGTGTAACCCCTGGTTGTGACCCGGGTCTAGTGTGTGTGTCCGGGCAGCAGTAAAGCTCTGAAGAACACAGCGGCTCTGCGTGGGAGTCCAGAGCTTGTAAATGATCCACCTCCCGATGATCCCGTCGATCAGCGCTTAACCCCAccagctccctccctctcctctgacCGAACGGTACCGGGGCGATCCGGTCAGCCCCACCAAGAAGCACCTCCTCAGAGACCTCGTAGGAATCTAATAATGAcctaaaatgtacatttgtaacTTTACGTGTGACTTTTAAACTACGGCTTTAACACGGTTTCTTCTGTAAATGTAACTTATAGCCCTAGTGTTTTTACAGTGTCCATCCACcgtgtctgttttatttaacttcctttcaataaagaaacacaagcCTC

Function

NR:

description
PREDICTED: rab5 GDP/GTP exchange factor-like

GO: NA

KEGG:

id description
K20131 RABGEF1; Rab5 GDP/GTP exchange factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005424 True 4767 mRNA 0.58 9 1388688 1402701

Neighbor

gene id symbol gene type direction distance location
AMCG00005413 kctd7 coding upstream 4098 1381741 ~ 1384590 (+)
AMCG00005416 LOC108240947,LOC106533470 coding upstream 29165 1342760 ~ 1359523 (+)
AMCG00005412 NA coding upstream 66093 1321808 ~ 1322595 (+)
AMCG00005414 wbscr22 coding upstream 83616 1301037 ~ 1305072 (+)
AMCG00005415 LOC107573094,LOC107551239 coding upstream 93240 1284287 ~ 1295448 (+)
AMCG00005425 NA coding downstream 345 1403046 ~ 1406537 (+)
AMCG00005422 trim37,LOC103132205,LOC106941548 coding downstream 5732 1408433 ~ 1425336 (+)
AMCG00005423 NA coding downstream 66475 1469176 ~ 1480171 (+)
AMCG00005437 NA coding downstream 83512 1486213 ~ 1490622 (+)
AMCG00005436 smg8 coding downstream 88770 1491471 ~ 1496565 (+)
G152111 NA non-coding upstream 134729 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 331293 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 374308 1014078 ~ 1014380 (+)
G151978 NA non-coding upstream 697752 690659 ~ 690936 (+)
G151968 NA non-coding upstream 851996 535895 ~ 536692 (+)
G152196 NA non-coding downstream 55453 1458154 ~ 1458747 (+)
G152198 NA non-coding downstream 59023 1461724 ~ 1461939 (+)
G152397 NA non-coding downstream 852664 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1669249 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1781120 3183821 ~ 3186988 (+)
AMCG00005418 NA other upstream 9386 1376468 ~ 1379302 (+)
G152159 NA other upstream 20732 1367014 ~ 1367956 (+)
G151969 NA other upstream 851325 536751 ~ 537363 (+)
G151967 NA other upstream 988823 398925 ~ 399865 (+)
AMCG00005434 NA other downstream 106801 1509502 ~ 1517580 (+)
G152267 NA other downstream 343259 1745960 ~ 1748934 (+)
G152337 NA other downstream 397110 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 526754 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 1101209 2503910 ~ 2510676 (+)

Expression


Co-expression Network