AMCG00005429 (ywhae,LOC106567579,LOC105005922)


Basic Information

Item Value
gene id AMCG00005429
gene name ywhae,LOC106567579,LOC105005922
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1929455 ~ 1946800 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005429
AAATGGTGGAGTCCATGAAGAAGGTAGCAGGTATGGATGTTGAATTAACAGTAGAAGAAAGGAACCTACTATCCGTCGCATACAAGAATGTGATTGGAGCCAGGAGAGCATCATGGAGGATAATCAGCAGTATTGAACAGAAGGAAGAAAGCAAGGGCGGggaagacaaattaaaaatgatccGGGAATACAGGCAAACGgtTGAGACCGAGCTAAAATCAATCTGTAACGACATTCTGGATGTACTGGACAAGCACCTCATTCCAGCTGCAAACACCGGAGAGTCCAAGGTTTTCTACTACAAAATGAAAGGTGACTACCACAGGTATCTGGCAGAGTTTGCTACAGGGAACGACAGGAAGGAGGCGGCAGAAAACAGTTTGGTAGCTTACAAGGCTGCTAGCGACATCGCAATGACAGAACTCCCACCCACGCACCCTATCCGCTTGGGTCTCGCCCTGAATTTCTCcgtattttattatgaaattcTTAATTCCCCTGACCGAGCGTGCAGGTTGGCAAAGGCTGCCTTTGACGATGCCATTGCAGAACTGGACACATTGAGTGAAGAAAGTTACAAGGACTCCACACTCATCATGCAGTTGTTACGTGATAACCTGACACTATGGACTTCAGACATGCAGGGTGATGATTCC
>TU191834
TTTAGTCCAGTGCTACCGGTTGAGTGGGGACGCCGCTCCAGCTGCTGTTGCTCCGTCAGGAACCGCCGACAGAGATAGACAGACTCACCCCGCAACCGAGCCTCTTCCCTCCGCCCGCAGAACCACGCCAGACCGGCTCCGAGAACCATGGGAGATCGAGAGGATTTAGTGTACCAGGCCAAGCTGGCCGAGCAGGCTGAGAGATACGACGAAATGGTGGAGTCCATGAAGAAGGTAGCAGAAGATGGCTGGTAGCAGTTTTAAAAATCCGAAGGAACCCtgttgctttttccttttattttccacCTCGGAAAGCAGGTCTGTATTGGCATTGGTCTAAAAACgagcaaacaaaataatgagaaGCCTGCATGTgttcaaattcaatttttttaaattttatttcttcctttcccccctccctctttctatttctctctcttttgttcAGTATGTGTAACTTGAAGCTAATTTGTACTACTGGATATCTGACTGGAGCCACAGATACAGAATCTGTATTGTTCTTACTGAAACACAGCATGGAATTaacattaaacttaaaataaaacaacctaaATTAAACATTCA

Function

symbol description
ywhae Enables several functions, including enzyme binding activity; ion channel regulator activity; and protein heterodimerization activity. Involved in several processes, including negative regulation of peptidyl-serine dephosphorylation; positive regulation of protein export from nucleus; and regulation of ion transmembrane transport. Located in cytosol and nucleus. Colocalizes with plasma membrane.

NR:

description
PREDICTED: 14-3-3 protein epsilon-like isoform X2

GO: NA

KEGG:

id description
K06630 YWHAE; 14-3-3 protein epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005429 True 656 mRNA 0.46 5 1941069 1943683
TU191834 False 588 lncRNA 0.45 3 1929455 1946800

Neighbor

gene id symbol gene type direction distance location
AMCG00005430 NA coding upstream 20745 1897877 ~ 1908710 (+)
AMCG00005457 NA coding upstream 183588 1740671 ~ 1745867 (+)
AMCG00005459 NA coding upstream 195386 1724009 ~ 1734069 (+)
AMCG00005458 rfc2,LOC107669364,LOC107561059 coding upstream 232312 1692137 ~ 1697143 (+)
AMCG00005441 NA coding upstream 258094 1667718 ~ 1671361 (+)
AMCG00005487 NA coding downstream 69216 2016016 ~ 2043288 (+)
AMCG00005486 NA coding downstream 102248 2049048 ~ 2055591 (+)
AMCG00005456 NA coding downstream 136434 2083234 ~ 2089877 (+)
AMCG00005455 LOC106612657 coding downstream 152244 2099044 ~ 2120874 (+)
AMCG00005527 pitpnab,LOC108410689,LOC105890453,LOC101470402,LOC100703534,LOC103045464 coding downstream 211162 2157962 ~ 2170629 (+)
G152198 NA non-coding upstream 467516 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 470708 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 675496 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 872060 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 915075 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 308565 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1125150 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1237021 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1252532 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1313410 3260210 ~ 3260429 (+)
G152337 NA other upstream 125552 1799811 ~ 1803903 (+)
G152267 NA other upstream 180521 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 411875 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 550153 1376468 ~ 1379302 (+)
G152159 NA other upstream 561499 1367014 ~ 1367956 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 557110 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 898417 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 1319574 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 2335717 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 2613413 4560213 ~ 4563020 (+)

Expression


Co-expression Network