AMCG00005433


Basic Information

Item Value
gene id AMCG00005433
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1573638 ~ 1578641 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005433
GGGCCGTGCTTTGTCATCAGGGCCTTCCAGACGCCGCCGCACTTCACCCCCTGGCCGAACAGCAGGTCGTACACCAGGACCTTGGCAACATTCATTTTGAGCTTCTTCTCCTTGAGCACGCCCGTGCTGGTGATGATGTCCTCCAGGACAGCGGAGAACTTCAGGGTCTCGCACACCAGGGCGAACAGCTGCTTGATGTTCTGTGGACGCGCACGACGTGCTCGCTCCCTCTCGCAGTTACGCTAACGTGGCAGAACCGGGTCGCTGAAGATGGAGCTGGCTGCGCTGGTCGCCGTCTCCCTGCTGGTCGGAGCCCTGGTCCTCCTGGTCGCCGTCGCGCTGGGCAAACAGCGGGGGCAGTCGAGGGAGCCGCCCGGGCAGCGAGAGGACTCGGACGagagagagagagagaatggagaGAAGCCCTCCGCCTCCAAGAAACAGAAGCAACAACAGCGCCCCCGCAAGGAGAGGCCCCAGCAGCAAAACTTCACCCACCCGCTCCTGGCCGCCTCGCTCAAGAGCCACAGCGGCAGCGTCTCGTGCCTGGACTTCAGCAGCAATGGGAAGTACCTGGCCTCCTCCGCTGACGACCGCACCGTCCGCATCTGGAGCACCAAGGACTTCCTGGATCGCGAGCACCGCTGCCTCCCTGGGGTTGGCAGGCTGTCCCTGACCTTgtgctgtctctgtctgtccgtctgcaGTGCATTCATCACCTGGTTGGCGAACGGAGAGACCATCCGCGTGTTCAAGATGACCAAGAAGGACGACGGGTCGGTCAGCTTCAGCGCGGCGCCTGAGGACTTCCCCCAGAGACACAAGGCCGCTGTCATCAACATTGGCATCGCTGAAACGGGCAAGTTCATCATGACAGCCTCCAGTGACACCACCATCCTGATCTGGGACCTGAAGGGAGAGGTGCTGGCCTCCATCAACACCAACCAGATGACCAACTCCTACGCCACCATCTCCCCCTGTGGCAGGTTCGTGGCGTCGTGCGGCTTCACCCCGGACGTGAAGGTGTGGGAGGTCTGCTTTGGGAAGGGCGGAGATTTCAAGGAGGTGGTGCGAGCCTTTGACCTGAAGGGCCACTCAGCAGGCGTCTGCTCCTTCGCCTTCTCCAACGACTCCCGCAGGATGGTGACGGTGTCTAAGGACGGCACGTGGAAGCTGTGGGACACGGACGTGGAGTACAGGAAGCAGCAGGACCCCTACCTCCTGCGGACGGGCCGCTGCGAGGTGTCCGAGCCGTGCCGCATCGCTCTGTCCCCCGATGCCCGGGTGGCCGCCATTGCCAACGGCGGGGAGCTGGCGCTGTACAGCACGGGCAGCGGGGAGCGCGAGGAGGAGATCGTGGGGGCGCATGCCGGGGACATCGCCGACCTGCGTTTCGACATCAATGGCCGCTACGTGGTCAGCTGCGGCGACCGCGCCATCCGTGTCTTCCACAACACGCCGGGCTACCGGGCCGCCATCCGGGACATGCAGGCCATGCTGCAGAAGGCCACCAACGAGGCGACGCGCCAGAGACTACTGCAGCAGATCCAGGATGCCCAGAGCGCACTGGACACGGTGTGCGGCCCCAAGGAGTGAGGGGTGCCCTGTCCTGCCCTGTCCTGTCCCCTCCCTCTCCAGAACAATCTGTCctgtctctgctgtgtgtgtggggttggTGGCGTG

Function

GO: NA

KEGG:

id description
K23325 TBL2; transducin beta-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005433 True 1683 mRNA 0.64 8 1573638 1578641

Neighbor

gene id symbol gene type direction distance location
AMCG00005432 NA coding upstream 6434 1557840 ~ 1567204 (+)
AMCG00005435 NA coding upstream 66921 1496852 ~ 1506717 (+)
AMCG00005436 smg8 coding upstream 77073 1491471 ~ 1496565 (+)
AMCG00005437 NA coding upstream 83016 1486213 ~ 1490622 (+)
AMCG00005423 NA coding upstream 93467 1469176 ~ 1480171 (+)
AMCG00005444 NA coding downstream 1189 1579830 ~ 1584712 (+)
AMCG00005443 NA coding downstream 8770 1587411 ~ 1597651 (+)
AMCG00005442 NA coding downstream 19884 1598525 ~ 1613076 (+)
AMCG00005441 NA coding downstream 89077 1667718 ~ 1671361 (+)
AMCG00005458 rfc2,LOC107669364,LOC107561059 coding downstream 113496 1692137 ~ 1697143 (+)
G152198 NA non-coding upstream 111699 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 114891 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 319679 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 516243 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 559258 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 676724 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1493309 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1605180 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1620691 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1681569 3260210 ~ 3260429 (+)
AMCG00005434 NA other upstream 56058 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 194336 1376468 ~ 1379302 (+)
G152159 NA other upstream 205682 1367014 ~ 1367956 (+)
G151969 NA other upstream 1036275 536751 ~ 537363 (+)
G151967 NA other upstream 1173773 398925 ~ 399865 (+)
G152267 NA other downstream 167319 1745960 ~ 1748934 (+)
G152337 NA other downstream 221170 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 350814 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 925269 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 1266576 2845217 ~ 2849608 (+)

Expression


Co-expression Network