AMCG00005434


Basic Information

Item Value
gene id AMCG00005434
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1509502 ~ 1517580 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005434
TCATGCAGTGTTTGTGCCACCAGCCCATCCTGGACTCTTCTGTCCTTCACTCTCCGTGGTGTGGATGTCCTTGAGTCCCCCGTGCTCCAGGTCAGCTCTAAACCGGGCACTGTGTGTGTACGtttgtgcgtctgtgtctgcaggtgtgtgccgccccccccccgccccaccacGGCCCTCACCTGTGTGCTGCGGTGCTTCCCCTGCGAGCCGTCCTGGGCCGGCAGCCCCTTCCCgcaccgcccccccaccccgcccaTGGTCAGGATGACGCGCTCCAAGACCTTCCAGGCCTACCTGCCCAGCTGCCACCGCACCTACAGCTGCATCCACTGCCGGGCGCACCTGGCCAACCACGACGAGCTCATCTCCAAGGAGCATGCATTTGAGAGCAGTCAGAAGTACAAGGAGGGCAAGTTCATCATCGAGCTGGCTCACATGATCAAGGACAACGGCTGGGACTGAGTGAGGCACGCCCAGAGGGgccggggggtgggggagggacgGGAGCGGGTGACTGTGTGCCCACCTGCCCGCCTCCCTCCCCCGCTGTCCGCTCTCGCCTGCTCTCgcccacactgtcactgcccTCGCTCTGACACACGCGCACCGCttggcagtgttgctgtgtgtgtctgcagcgggatggggggcagggggtggtTTCAGGACTGCAGGCCCTcgcctcccctcccctctctacACACCCGGCAGCTGCAGGAGTGGGACTGCGGGGGGGACCGAGGGGAGCTGGGGGCgggggcacacacacacacaccctctaaAGAATGCAGGTGTTGCCCCCTCTCACTAACACCAACAGAAAGCGCTTCAGACGATGCCCCCCCACTGTGCCCAGATGTGGTGCCAAGGCTGTGAGGTCAGAGGGCCCGGTGCGCAGAAGGCCCCAAATCGGGGCTCTAGACTCCGGGTCCTGGAGAGCTGTGTGGGGCCCTCTGGTCATCTTTCTCTCGGGTCAATAGTGTGCACAGTGCAGCCCCACCATTGGCTAGTGTAGATCTTTAGCTGCAAATCAAAGATGGTTAGAAACCCCTGAGGCCTGGGGGGCCACTGCACTGCACCAGGGCTCCCCAGGACCACACCTCACCTCAGGGCATTTGTGGTCCACGGGATGTCCCAGCTGAGGGTGGGTTTGTTTTCATCCCCCTAATCCTGAAACTAAGGCGAATGAGAGGCGACTGTGCCCTGACGGTTGTGGTTTTCCGTGGCCGGGTGCTggtccagcccagtccagcccGGTGGTTTCAGACTCCACTCTTCGGGGGGGCAGTGCTCTTGTATTGTTACggatgttttggtttatttgtttcgTTCGGTTCGCATTTTGTTTTAACCGTCAGCTGCTTAAAACACTGTAATGTTTGTCCTGTTCAGCTAATTAGTGACCCTCAGAGTGTGGAGGGTGACCCCCCTGCCGTACTGGCGCTGGAGTTAAGTGACCAGTGAGCAAAGGGGGCCCGGTTCTGTGCAGAGAAGGCCCCCCCGTGTGTCTGAAGCGCTTTCTCAACCTGACATGTCTTGTGTTGACTCTGTCGATCTGCTACACTGCCTCTCAGCAGCTTCACACACCGCACGCTGTTGTCAGTCCAAACATCgacaaccccaaccccaaccacAGAACCTGCTAGGCCCAGACTCTGTCACTGGATCCCCTGGTAGCCACGGCGCCCGACTGGCAGTGGAGAGAGCCAGTCGCACGGTTGCCGTAAAACCCCGGCACAACCAAAGAACCCGCCCACCTGTCTGCGATTGGCCGACCAGACAAAACTAATTGCTAATTGTGCTTTGGACAAAGTGATGCGATCGGAGGATTGTGACTGGCTGAACGCCGCCCTGGCGGACGGCACTTTCTCTCCGGGAGATGGCGCTCTGTCCGCTGTTGTACTCCACAGATATATATTCACTCTGAACGTGAACGCTGTGTTACGGTATATCACACCTGTAAATAGTCATTATTTAATGtctcttgttgttttgtattaatttattgttttggtaAATGCCGTGCTCTTGCTGTCGCCATCCCcccatggtggtggtggtgggggggctgtgTATTTGCTACTTTTTTACAATTTGAAACCGTCTCAATTTACGGTCCTTTGTGAAGGACGGCGAGGCGATGACTGTGATACTGGAGCCTCATCAATAAAGATTCTCGTGCTGTCGAACCCTCAGTCCGGCCTCCGC
>TU191670
gggagagagagagagagagagagagagagagagagagagagagagagagagagttggcaTCGAGAGGAATGCGAAGGATTTGCGCTCCATAAAGTTGGCATTCCCAGGAGGGGAAAGCACAGCTGCTGACCAGcgcatacattttatttttttaattccaaggtgtgtgccgccccccccccgccccaccacGGCCCTCACCTGTGTGCTGCGGTGCTTCCCCTGCGAGCCGTCCTGGGCCGGCAGCCCCTTCCCgcaccgcccccccaccccgcccaTGGTCAGGATGACGCGCTCCAAGACCTTCCAGGCCTACCTGCCCAGCTGCCACCGCACCTACAGCTGCATCCACTGCCGGGCGCACCTGGCCAACCACGACGAGCTCATCTCCAAGGGTGAACGTGGGCTGTGGGCCGGCGGAGGAGAGGGTGCTGCTGACTGGGCTTCACGCAGTGGCAGATATCTACTGTGAGAACTGCAAAACCACGCTGGGCTGGAAATACGAGCATGCATTTGAGAGCAGTCAGAAGTACAAGGAGGGCAAGTTCATCATCGAGCTGGCTCACATGATCAAGGACAACGGCTGGGACTGAGTGAGGCACGCCCAGAGGGgccggggggtgggggagggacgGGAGCGGGTGACTGTGTGCCCACCTGCCCGCCTCCCTCCCCCGCTGTCCGCTCTCGCCTGCTCTCgcccacactgtcactgcccTCGCTCTGACACACGCGCACCGCttggctgtgggggggggggggtacttGCTGCTGTCCCTGTAGGTGGGGCAGTGCCGGGCTTTGTGCCCTCCCAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005434 True 2211 mRNA 0.59 3 1513203 1517580
TU191670 False 817 lncRNA 0.64 4 1509502 1515952

Neighbor

gene id symbol gene type direction distance location
AMCG00005435 NA coding upstream 2785 1496852 ~ 1506717 (+)
AMCG00005436 smg8 coding upstream 12937 1491471 ~ 1496565 (+)
AMCG00005437 NA coding upstream 18880 1486213 ~ 1490622 (+)
AMCG00005423 NA coding upstream 29331 1469176 ~ 1480171 (+)
AMCG00005422 trim37,LOC103132205,LOC106941548 coding upstream 84166 1408433 ~ 1425336 (+)
AMCG00005432 NA coding downstream 40260 1557840 ~ 1567204 (+)
AMCG00005433 NA coding downstream 56058 1573638 ~ 1578641 (+)
AMCG00005444 NA coding downstream 62250 1579830 ~ 1584712 (+)
AMCG00005443 NA coding downstream 69831 1587411 ~ 1597651 (+)
AMCG00005442 NA coding downstream 80945 1598525 ~ 1613076 (+)
G152198 NA non-coding upstream 47563 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 50755 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 255543 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 452107 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 495122 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 737785 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1554370 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1666241 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1681752 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1742630 3260210 ~ 3260429 (+)
AMCG00005418 NA other upstream 130200 1376468 ~ 1379302 (+)
G152159 NA other upstream 141546 1367014 ~ 1367956 (+)
G151969 NA other upstream 972139 536751 ~ 537363 (+)
G151967 NA other upstream 1109637 398925 ~ 399865 (+)
G152267 NA other downstream 228380 1745960 ~ 1748934 (+)
G152337 NA other downstream 282231 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 411875 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 986330 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 1327637 2845217 ~ 2849608 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G7153 NA unknown CI01000000 null 11244457 ~ 11245633 (+)
mexican tetra (Astyanax mexicanus) LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 misc NC_035897.1 CM008300.1 23876999 ~ 23907474 (+)