AMCG00005435


Basic Information

Item Value
gene id AMCG00005435
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1496852 ~ 1506717 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005435
TTATTTGGTGGGTGGGCAGTTTTAATCAGTAATTGGACGAAGCTGACCGGTGATCTGAGTCCCCGGCTCTCACGGGGCAAGGGTGTGATATGGGCTTCACAAACACGGTGGACAGAAACTGTACTTGAAGGACAGAAGAACAGGCACAGGCATGCATTGCTTCACACACGTGGGCGGCGGGGCGAGGCTGGCGGGGCTGCAGGTTGGTGTGCCAGGAATCCGTCTTCACAAAGCACAGACTGCAGGCTGAGTGCCGTCTCGTTCATCCAGGCAGCTCCTGACTGATCGTCCTGGGGAGCTGAGCATGACCTTGACGGACCATCACAAACAGCTGAGGCGGTGTGTGTGGCAGCTCCCCTGCCAGATAGCAGTTAATTCGGTTTCTACACCCATTTAAATCATCCCACTGCCTAGACACTCCTCCACAGGTCTTTCACACTCCTCCACACATGCACGTGTACAACATTGTGCAAAGCGTCTCTGATCCAGCTGCGGTTGTCATTGAGGGTTTAAATTGACTATTGGTGCTATCAATGCAGAGCCATATTCCAGGAACTGGAATAACGCGTGTGTCATTGATTTTACAGAGCCTATATGATCGCCTATGAAACGCATGCATGCCCTGCAGTGCGGCGCTGCGGAAGTCTGGCCGGTGCTCTGAGCGCGTTTGTCTGATAGGAAGGCGACGTCACCGTGACGCGGGAGGGAGGCAGACCCTGCACTGGGACCATCTGTTCGGCACAGGAAAGCGAGCAATAGGCTTACAGAGCTGTGAGTCTAATTTACCGCGGCCATTCCTGTGTGTAAGGATCTTGGCTGGTGTGGGGCCTTTACCGCTGCCACCGAGGAGCGGTGAACATCCAGCCCGAAACGCAGCGGCCGGAGCCGGGCAGGGCTGTGTTGTTCCTCGGGCAGGACGCGGGTCTGAGCTGCGCATGCGCACGGCCGCAGCTGCTCCTTGAGCCGGGTTTccagcgcagcgcagcgcagcgccGAGGCGAGCCGGGACGGAGGGCAGGAGAGCCCGGGGCAGCAGGCGAGCTGGACAGGGTAGACGGAAGCAACACGGGAGGCAGGGACGTCAGGGGCATCAGCTCTGTCAGCATCACAGGACATTGTTCTGAAATCTGCAGCTAGCGAGCGACAGACGGACAGAGCTGCGCACCATATCTGCGCAGCTGCCGGCGCCTGTCTGTGTCTCCGTGTCGGTCGCTGCTGGGTGTCTGTCTGCTTACCGGGGAACAGAGATGTGTGCGACGGTATACGTGCTGTCCACCCTGGGGGGATACGTCCTCGCCTCCGCCTTGCTGCTCAAGTGCCCGTCGCTGCTGCACCGGAGGAAGCGGGAGGCTTTCCGCAGCCGACACATCTCGCACCGCGGCGGAGCTGGGGAGAACCTGGAGAACACCATGACTGCCTTCCGACATGCCGTGGACCTGGGCACCGACATGCTGGAGCTGGACTGTCACCTGACCAGGGACAAGCAGGTGGTGGTGTCGCATGACTCCAACCTGAAGAGGCTGACGGGGGTCTGCACCAACATCTCCGACCTGCCGTACGCCGAGCTGCCCTCCTACCTGTGCAAACTGGACGTGTCCTTCCAGAGAGAGTGCTGCTGCGAGGGCGGGGAGGACAAGCGCTTCCCCCTGCTGCAGGACGTGTTCCAGGCCTTCCCCACCACGCCCATCAACGTGGACATCAAGGTCAACGACGACGCGCTCATCAGGAAGGTGTCCGAGCTGGTGACCAAGTTCGACCGGGAGGATCTGACGGTCTGGGGCAACGCCAGCAACCAGATCGTCAGCCCGGGACACCAGGCTCCGTCCTCGGGGTCGGCCCCCCAGATCGGCGGACCCCAGcagatgtgtAACCCGCGAATCCCGATCCTGTTCAGCCTGAAGAGGGTCCTGCTGTTAGTGGGGCTGTTCTACACTGGCCTGCTGCCCTTCGTGCCCCTGAAGGAGCAGTTCCTGGAGATCCCCATGCCCTCCATCATCACCAAgcTGAAAGACCCCCGTCGGATGAGCAGGAGTCAGCGGTTCATCACCTGGTTGGCCGACACGCTGCTGATGAGGAAGGCTCTGTTTGACCACCTGACGGCCCGTGGCATACAGGTGTATGTGTGGGTGCTGAACGACGAGGAGGACTTCCAGAGGGCCTTCGCGCTGGGCGCCACAGGCGTCATGACCGACTACCCCACCAAGCTGAAGGAGTTCATCGAGAAGAACGGGCACAGCTAGGCCCCGCCCCGTCCTGCCCCGCAACACCCCCCCAGCCCAGAACCTCCTTCATCCGTCTCCGTGGTGCGACCCGGTGGCCCGACAGACAGCCGCCCGTGTCTGAACTTCACCAGCAGTGTGTTAGCCTGGGCAGACACGGGGGCGACCGGTCTCCACCACAGCCCGACTGGATCAGTGTTTTGCCTCCATTGGTCTAAATAACGAACTGTGTGGTGGACGACAGGACTGAGTGCCCCCCCTGCCAGCGCCATCTTTCCCCATGTGCCCAGCAAAAAAGGGCCAGACTGCCCAAGATTCCcgagtgtatatacatgtatatagtcATGCTCGCCACAGTACCGCTGCTGTGGGGTTATCTGGCCCTGTCCATAACCGCCAACCTAGAGTCTTAACAGGGACCAGGGCTGGTCTCCAGGGCTGTCCAAGGCTGTTTATTTGGGTTTTTTTCCAAGATGAGCACAAGGTGGAGTTTGAAAAGCATCTGAGAGGTTTCCTAGGACCCCCAGATCCTCCACACGGACATCATCGTCGGCACCGCGGTGAAGAGCGCTGTGTTAATCTGGGAGCAGACGGGGGAGCCCCCCAGCAGAGCAACACACACCCCGCAGGAAGCCCAGGCGACTCAGATCGGACACTGTGAAGGGACAGACGTGATGTAGTGAAATGCAGGCCGTTTGTGAGGATTAGAGGATTAGAGGAGTGACGCTGTGTGTAAGAGCTGGGGGGCGCATAGGGCAGATCAGAGTTGGGGGGGGCAGGATTGCGGGTAACCGGCAACGAAGGGGCGTCCGGGGTGACATCGCTGTGAGTAGAGACTCCGGTTGTGTGTCTGGTGTTTCAGTGTCTCACGTCATTGTTCTTCAtctgctttttaattgtttcacgttgtgttttaaatgaaagtatttGAAAGATCGCAGGTCTGAGTTctgtcttgttgttgttgttgtggttggttttattttttaaatccctatTTTAAGAAGTAGTTTAACCGTTTGCTGCAGACTGTTAAACTCAAGTGCATTCAAAATATTGGATACTTCTCTGTGGAGTCGTGTAGGCTGAGGTTCAGAGCCAAGATGTACAATACAGGTGactacataatgtgtgtgtgcgtgtgtgtgcatgtgtgactcagtgagagtgtgtgtgtgcgattgTGCAGGTTTTCTATTGCTCAACACTGAGGCCCGTGTCTGCACTGACCCTGAGAGTCTCCCTGTGGGCCCACTTTCTCTCAGCTGCCCCAGCAGCCTCCCCCTCTCAGGTGACGTACAGTCGGACACTCGCTGCTTCCTCTGAAGCCCCTGAGCTCTAGAACAAGAACCCTGATGGCTTCTCTTCATCCAAGTGAATCAAGAACACGCTACCCTACCTGTGACCGAACACAGAACCTGTGGGCTTCACTACTAtgccctcttaagcattatttggcagtgtgacacgcagctcctgtgcatagaagtgacactattcctacaatgcgcacatcatttgaaagcttattctcttggcctCCAGCGCGtctcattctcaaacacatccgattcacAGTGTCCGTGTCGCccaccatcattcagagcctgggggggAAACGCACAGTGTGCTCCGGGGTGGTCttattcagacggtcacagatcactcagttttgatcaggatttctttgcaaattggcttgttttgttcagaacaacctaacgattaatccagtata

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG:

id description
K22387 GDPD1_3, GDE4_7; lysophospholipase D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005435 True 3957 mRNA 0.57 11 1496852 1506717

Neighbor

gene id symbol gene type direction distance location
AMCG00005436 smg8 coding upstream 287 1491471 ~ 1496565 (+)
AMCG00005437 NA coding upstream 6230 1486213 ~ 1490622 (+)
AMCG00005423 NA coding upstream 16681 1469176 ~ 1480171 (+)
AMCG00005422 trim37,LOC103132205,LOC106941548 coding upstream 71516 1408433 ~ 1425336 (+)
AMCG00005425 NA coding upstream 90315 1403046 ~ 1406537 (+)
AMCG00005432 NA coding downstream 51123 1557840 ~ 1567204 (+)
AMCG00005433 NA coding downstream 66921 1573638 ~ 1578641 (+)
AMCG00005444 NA coding downstream 73113 1579830 ~ 1584712 (+)
AMCG00005443 NA coding downstream 80694 1587411 ~ 1597651 (+)
AMCG00005442 NA coding downstream 91808 1598525 ~ 1613076 (+)
G152198 NA non-coding upstream 34913 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 38105 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 242893 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 439457 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 482472 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 748648 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1565233 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1677104 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1692615 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1753493 3260210 ~ 3260429 (+)
AMCG00005418 NA other upstream 117550 1376468 ~ 1379302 (+)
G152159 NA other upstream 128896 1367014 ~ 1367956 (+)
G151969 NA other upstream 959489 536751 ~ 537363 (+)
G151967 NA other upstream 1096987 398925 ~ 399865 (+)
AMCG00005434 NA other downstream 2785 1509502 ~ 1517580 (+)
G152267 NA other downstream 239243 1745960 ~ 1748934 (+)
G152337 NA other downstream 293094 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 422738 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 997193 2503910 ~ 2510676 (+)

Expression


Co-expression Network