AMCG00005436 (smg8)


Basic Information

Item Value
gene id AMCG00005436
gene name smg8
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1491471 ~ 1496565 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005436
CCCGGACACTGTTCTGGGGGCACGGAGTCACTCGACTTCCGCCTCGCCGTGTTTCGCTCTGAGTCAAGATGGCGGCGCCCATGTCGCTGGGTTCGCTGCTGCAGTCCAAGCTGGTGGAGGACCCTCTGTACCGGGACGAGGGGCTGTGCGTCCTGGGCATCTTCGGCAAGAGCGCCCTGCAGCCGGTCTCGGCCAAGGAGTCACTCGTCAACACGCTGGCAGACAAGCACGTCTTCCTGCTGTTCGGGCCGGAGGAGGAGGCGGGCAGCTCGGCTCAGGGCAGCTCGATCCGGGCTTACTATAACGAGGAGAGCCGGGTGCTGTTCCTCGTCCTCACCTCCGTCTGCGACAACCGGCAGCTGCTGCGCGCCTGCGAGGCCCTGGGCTCGGGGACCGGCCACGCCGAGGCGCATGAGCTGTGGAAGGGCTGCGAGAAGCAACACTGTCTGCAGCTGCTCTACCTGTTCTCGCTGTGCCACGTCCTGCTGCTGGTGCACCCGACCTGCGCCTTCGACGTCACCTACGACCGGCTGTTCCGAGCCCTGGACGCGCTCCGGCAGAAAGCGCTGCCGCTGCTCCGGGCCGCCATAAAGGACTGCCCGGTCTCCAAGGAGTGGAAGCTGAACTGCAGACCCTGCCCGCCACGCCTGCTCTTTGTCTTCCAGATGAACGGAGCTCTTAAGGTCGGCGGGGGCGCAGGGGGCCTCGGCTCGGCCTCCAGTGGCACAGACGCCCCAGGGGGGAACCCAGAGAAGCCCAAGAAGCACTCCCCCCGGCGGCGGCTGCAGCACGCCCTGGAGGACCAGATCTACCGCATCTTCCGCAAGAGCCGTGTCCTCACCAACCAGAGCATCAACTGCCTCTTCACGGTGCCCGCCAACCAGGCGTTTGTGTACGTGCTGCCCGGGCCCGACGAGGACCCTGTGGGCACCTTGCTGGGGCAGCTACGAGCCAACTGTGCGCTGCGGGACAGCGATGCCAGCATGTCCCTCACTGGCCCCAGGCGCTACCAGCAGATGCGCCACTCTGCCAGGCAACCCTCCTTCACCGTGGAGAGTAGTGCCAGCTCCTCGACGGGCAGCGGCCAGCTGGTGGATTGCACCCTGAAGGAGTTCCTGTGGCAGCACGTGGAGCTGGTCCTGACCAAGAAGGGCTTCGATGACAGTGTGGGTCGCAACCCCCAGCCCTCGCACTTTGAGCTGCCCAGCTACTCCAAGTGGGCGCAGGTCGCGGAGCGGCTGCACCAGGTGATGCTGGACTGCAGGGATGAGGAGCTGGCCGAGCTGGCGCTGAAGGTGCAGGGGCAGGGGCTGCTGAAGGTGCTGGAGGGCTTCCTGGACGCCGACGCCAAGTTCTCTGAGAACAGGTGCCAAAAGGCGCTGCCCCTCGCCCACAGTGCCTACCAGTCCAATCTGCCGCATAATTACACCACGACAGTGCACAAGAACCAGCTGGCCCAGGCGCTGCGCGTGTACAGCCAGCACGCCCGGGGGGTGGCCTTCCAGCGCTACGCCCTGCAGCTGCACGACGACTGTTACAAGTTCTGGAGCAACGGGCACCAGCTGTGCGAGGAGCGCAGCCTCACGGACCAGCACTGCGTTCACAAGTTCCACCAGCTGCCCAAGACAGGGGAGAAGACAGAGATGGACCGCAACCCCCCAATACTCCACCACAACAGCAGGGGGCGCTCCACCAGCTCCTGCAACTGTGGCCGCAAGCAGGCGCAGCGTGAGGACCCCTTCGACATCAAAGCAGCCAACTACGACTTCTACCAGatgttGGAGGAGAAGTGCTGTGGTAAGCTGGAGAGAATCCATTTCCCCGTGTTCCAGCCCAGCACTCCGGACCCGGCCCCCGCCTGTGACGAGGCGGACGAGCCCCCGGAGGCCGAGGCGGGTGGGGAGGGCGAGCAACTGAAGGAGAAGGAGGCTGTGGGGCACACGCCGGGAGACAGCACCAGTCTGAGTCTGGCCCTGAGCCTGGGCCAGTCCACAGACAGCCTGGGGCCCTACGGGGGCGGCGATGGGGGCGAGGGCCAGGAGAAGAGGCCCAGTCTGGTGGACCGGCAGGCCTCCACGGTGGAGTACCTCCCAGGGATGCTACACTCCGGCTGCCCCAAGGGGCTGCTGCCTAAGTTCTCCAGCTGGTCCCTGGTCAAGCTGGGTCCCGCCAAGGCCTACAACTGCCACATCGGCCTGGAGCAGCCCGGCTTCCTCCCCAGCTCCGCCTTCCTGCTGCCCTGGGACGTGGTGATTCGCTGCCGGCCGGAGGAGGAGATGGGACTGTCGGAACCCCTGGACACGGGCTCCTCATCCTGGCCCGCCCCAAACAAGACACTGCCGGGGAAGCGGGGCGGCGCCGGGGGGCTGGGCCGGGGCCGGCGCGGCCGTGACGACGTGGCCAGGGCCTTCGTGGGGTTCGAGTACGAGGACAGCCGGGGCCGGCGCTTCCTGAGCTGTGGGCCGGACAAGGTGGTGAAGGTTCTGGGGCCCGGGGGCCCAAAGGAGCCGGCCACACGAGTCCTAAACTGCGACATGCCGCTGTACATTCCCTCCCCCGCCCAGGGCCGCGGCCTCAAGCCCCACTACGCACAGCTCACCCGTCTCTTCATCGTGGTGCCCGACGCCCCTCTGGACCTCATCCTCACCCCGCAGATCCAGCCCGGCCCGCCCCCTTGCCCCGTCTTCCACCCGGAGCAGGCGGAGGTGGTCCTGCCCCCCGACGGCTTCTGGGTTCTCCGTTTCCCCTACGCCTACGTGACGGAGCGGGGGCCCTGCTACCCCCCCAAGGAGAACCAGCCGCTGGCCAGCTACCGGGTCCTGAGGGGCATCCTGCGAGCCAACACCGCCAGCCCAGCCCCGCAGTGACCTCCGCGTGACCTCCTGACCCGACAGGGACAGCAAGGGGCTGACGGTGAGTGGGCTCTGAGAGGGGTGGGCAGAGACTGAGCTGGTGCAAGAAGAAAAGAGAGCGCTCCGGGATCCGCGAAGACGACCGTCAGACAGAAGACCATGATCGCCGGGGAGGACCGGCGACCGCAAATGGTAAAACGAAAGAAGAAAACCGAGTGAAGCAGCGCTGATGTtgacttttgtgttgtttttgtatttattttctccccttcCTGCTCCCTGCCCTGATCTGattcatgtaaaatataatcaCTTTGGAGAACTGTC

Function

symbol description
smg8 Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Orthologous to human SMG8 (SMG8 nonsense mediated mRNA decay factor).

NR:

description
PREDICTED: protein SMG8

GO: NA

KEGG:

id description
K18734 SMG8; protein SMG8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005436 True 3179 mRNA 0.66 4 1491471 1496565

Neighbor

gene id symbol gene type direction distance location
AMCG00005437 NA coding upstream 849 1486213 ~ 1490622 (+)
AMCG00005423 NA coding upstream 11300 1469176 ~ 1480171 (+)
AMCG00005422 trim37,LOC103132205,LOC106941548 coding upstream 66135 1408433 ~ 1425336 (+)
AMCG00005425 NA coding upstream 84934 1403046 ~ 1406537 (+)
AMCG00005424 LOC106567664 coding upstream 88770 1388688 ~ 1402701 (+)
AMCG00005435 NA coding downstream 287 1496852 ~ 1506717 (+)
AMCG00005432 NA coding downstream 61275 1557840 ~ 1567204 (+)
AMCG00005433 NA coding downstream 77073 1573638 ~ 1578641 (+)
AMCG00005444 NA coding downstream 83265 1579830 ~ 1584712 (+)
AMCG00005443 NA coding downstream 90846 1587411 ~ 1597651 (+)
G152198 NA non-coding upstream 29532 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 32724 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 237512 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 434076 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 477091 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 758800 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1575385 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1687256 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1702767 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1763645 3260210 ~ 3260429 (+)
AMCG00005418 NA other upstream 112169 1376468 ~ 1379302 (+)
G152159 NA other upstream 123515 1367014 ~ 1367956 (+)
G151969 NA other upstream 954108 536751 ~ 537363 (+)
G151967 NA other upstream 1091606 398925 ~ 399865 (+)
AMCG00005434 NA other downstream 12937 1509502 ~ 1517580 (+)
G152267 NA other downstream 249395 1745960 ~ 1748934 (+)
G152337 NA other downstream 303246 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 432890 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 1007345 2503910 ~ 2510676 (+)

Expression


Co-expression Network