AMCG00005437


Basic Information

Item Value
gene id AMCG00005437
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1486213 ~ 1490622 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005437
GAGTCTCTTCCTTCACAGCCTATCGGAGTCGTGAACGTCTTCTGCCCGCCAGAGGTAGTGTTAGCTGATTGGTTGGGCATCCCTGACTTTTAACTTTGAAAATAACCCGCCGCTGTTTCCTGCTCTCAGTGTCATGGCGAGGCAAATGgtcatGAGCAGCAGCGCTCAGCAGCAGCGCAAGAAGAGGAAGCTGAACCGGAGGCGATGGCTGCAGAAACGGCCCTGCCTGGAGGTGGCGCCACTCCCCGCTGCGCCTGCCGCCCCAGAGCCGCGGAGCACGCTGGAAGTCAGCCCGGTGGAGCCGCCCCCCATGGCATGTGCCAGCAATAGCAGGGTCGGGCGCTGGGGCCTGGGAGTGGTGCTGCTGACCGTGGGTGCCGTGTACCGGGGCTGGAGGAGCAGGCTGGCAGAGGTGTGCTCCCGGCTGCAGGACGCGCTCTTCCCGTGGCGAAGGTGCAGCCAGGAGCTGGGCGCCCTGCAGCAGCAGGTGGAGGAGCTGCAGAGGGAGCTGAGCCGGCTGCACGGCACACTGCAGctggGTGGGGAGGTGAAGAGCCTGTCCTCTTGTTCTGGGGCCGCAGTCTGCAGTCTTCCTGTTGGGCATCTGACGGCCCCGTTGCTCCTGGCCCCTCCCCCACCTGCTCCTGCTCTGCTGGCGCcgcctccacctccacctccacctccacctcctctgCCCCCTGCCGCCCTCCTGAAGAGACCCCTCCAGATCCTCAGGAAGACCCTGGCCTCCAAGACCCCTCGGAGCCCCCCAAGGAAGAGTGACATCCCTACTGCGGTGACCCTCCGCGACCTGCAGGCGGTGAAGCTGCGGAGAGTGACCAATCCCATCCGCAAGACCAGGGCGCCGTCCCCTGAGAAGACACGCGTCCCCCTGGTCACAGTGGATGAGCTGCAGAGGGTCAACTTGCGACCCCACCATGCCCTCGACCTGCCGCCCAAGCTGCGCATTGCCCTGGCCAGGTCGCCTGGCAAGAGCCCCCTGACTCTGCGCAGACAGCTGAAGAAGGTCAATATAGAGAGGAGCCCCGGAGGGACCCCGCTCTACgacaaggagaacaaggagacGGGCACTGGGCTCACCCCCATCATGACACAGGCACTGCGGCGCAAGTTTCAGATGGCTCACCCGAAAAGCCCGTCCCCCAAAGCCAGGGCCGTGAACCTGAGCTTCGATGAGCAGAACTGAAATGgctgcttttatatttaatggttttaatactCCCTCTGtgtgctatttttaaatatggaatGACCCGTGGCATGCTGGAGACCAGGGACTGTNNNNNNNNNNCCCCCCCCACTGCTGCTGAATCTACCAGAGGGACACGCATCGATGCACTTTTGTTTATTCTACACAGTCTGTGTCTGTCCTGTAAATAGATATCTCTGTGGAGGCCCGTGGGGAGTCCGGCTGCATTCTGGCCAACAGCTACCCGTTTTGGGAGATGGAGGCCCTGTTGTTGTTAAGACTCTCGCCTTCTGGTCTCCCCAAGAGCACAGCTGACGAGCGGCCAGGGGTGCCTCAGGGAACGGGGTGCGGACACCGTCTGTAGCCGATCTCGGGGTCTGTGCGCGAGTGCCTGGGCCTCCTGCTTTAGTCggtctgtgctgctgctgtacagtttaaaaaagaaaaacgaatgCAGAGATATTGTGAGGTCAGTATTGTTGATCAATATTATATAAGGCTGTGGAATAAGGACCATAAAAAAGCAAACCAGCACCACGGCCTCGGCACAAAACACTCACCTGTTGGCTAGCTTCACTGGCGGCACAACCTGGGCACCCGAACCACTCAACACTCCTCCAGACAGACGCGGTTAGCAGTGAATGATTTTGTGTAGCAACCGGtctatttaaaactaaaactaatcctGCATAAAAATCTCATTCACAGGCCCTGTGTTTGCTGGCAGTCTGAATAGGAAATACCTGCCAAGCTAAGCTCTGTATGCGAAGGTTCTCTAAAAGCTCGTACCTATAACCTGCTCCGTTTGCTCTTCACTCTAGCTGTGTAAAGTGTTTTGCATGGATTTTTGTATggatttttttcctgttgcaatacttttcagtgtgtttgtgctAAAGCTTACCAGTACGTAATGTATATAAAGTTTACATGGCTGTCTTTGTCATCTCAACTGTAAGAAGAGCTCATTGTGTAAAGATCACACTCTGTAAACACTTACATTAAACAACATAACCAGA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03030 DNA replication
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005437 True 2229 mRNA 0.56 10 1486213 1490622

Neighbor

gene id symbol gene type direction distance location
AMCG00005423 NA coding upstream 6042 1469176 ~ 1480171 (+)
AMCG00005422 trim37,LOC103132205,LOC106941548 coding upstream 60877 1408433 ~ 1425336 (+)
AMCG00005425 NA coding upstream 79676 1403046 ~ 1406537 (+)
AMCG00005424 LOC106567664 coding upstream 83512 1388688 ~ 1402701 (+)
AMCG00005413 kctd7 coding upstream 101623 1381741 ~ 1384590 (+)
AMCG00005436 smg8 coding downstream 849 1491471 ~ 1496565 (+)
AMCG00005435 NA coding downstream 6230 1496852 ~ 1506717 (+)
AMCG00005432 NA coding downstream 67218 1557840 ~ 1567204 (+)
AMCG00005433 NA coding downstream 83016 1573638 ~ 1578641 (+)
AMCG00005444 NA coding downstream 89208 1579830 ~ 1584712 (+)
G152198 NA non-coding upstream 24274 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 27466 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 232254 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 428818 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 471833 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 764743 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1581328 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1693199 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1708710 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1769588 3260210 ~ 3260429 (+)
AMCG00005418 NA other upstream 106911 1376468 ~ 1379302 (+)
G152159 NA other upstream 118257 1367014 ~ 1367956 (+)
G151969 NA other upstream 948850 536751 ~ 537363 (+)
G151967 NA other upstream 1086348 398925 ~ 399865 (+)
AMCG00005434 NA other downstream 18880 1509502 ~ 1517580 (+)
G152267 NA other downstream 255338 1745960 ~ 1748934 (+)
G152337 NA other downstream 309189 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 438833 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 1013288 2503910 ~ 2510676 (+)

Expression


Co-expression Network