AMCG00005438


Basic Information

Item Value
gene id AMCG00005438
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1570753 ~ 1574756 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005438
ATGGCCTTGTACGTGAAAGCCGCCGAGATCCTGGAGAAGAACATCAAGCAGCTGTTCGCCCTGGTGTGCGAGACCCTGAAGTTCTCCGCTGTCCTGGAGGACATCATCACCAGCACGGGCGTGCTCAAGGAGAAGAAGCTCAAAATGAATGTTGCCAAGGTCCTGGTGTACGACCTGCTGTTCGGCCAGGGGGTGAAGTGCGGCGGCGTCTGGAAGGCCCTGATGACAAAGCACGGCCCCCGGCTGCAGGCGGCGCTGGCCCGGCTCAAGGTCAAGAAGAAGGTCAGCCGGAACCAGGACCTGCTGCCCACGACCGGCAAGCCTACCGAGGCCCAGCTGCCACGCTACGCCCGTGTGAACACGCTGAAGACCACGCTGGAGGACACCATTGACTACCTGAAGAGAGAGGGCTTCTCCTACCTGGGCCGAGCCAGCAGCCTGGAGGACCTGCGCCGACTCTCGGGGAAGAACTTCCTGTGTGACCTTCACCTTCCGGAGCTGCTGGTCTTCTCGCCCAAGACCGACCTCCACACGCACTTCCTGTACCAGGCGGGCCACCTCATCCTGCAGGACAAGGCCAGCTGCCTCCCCGCGTTCCTCCTGAAACCCCCTGCTGGGGCCCATGTCCTGGACGCCTGCGCCGCCCCCGGGAACAAGACCAGCCACCTGGCCGCGCTGCTGGGAAATAAAGGGAAGTTGTTTGCGTTTGACCTGGATGCGAAGCGATTGTCCACCATGAGCACCCTGCTGCTCCGGGCCGGGGTCACCTGTCACCAGCTGGCCCACCAGGACTTCCTGACGGTCGACCCGCAAGACCCCCGCTACAGCCAGGTGGAGTACATCCTGCTGGACCCGTCCTGCAGCGGCTCAGGCATGCTGGGCCGGCCGGCGCAGGAGGCAGAGGCGGGGGAGGAGGCGGGGCGGCTGGCGGCGCTGGCGGGGTTCCAGATGCGCTGTGTGCGCCATGCCCTGCGCTTCCCCCGGCTGCGGCGCCTCACCTACTCCACCTGCTCCGTGCACGCGCAAGAGAATGAGGAGGTGGTCAGCGCTTGCCTGCAGGACAACCCCGGCTTCAGACTGGTGTCCTTGTTGCCTGGCTGGCAGGAGCGAGGGCACCCCCCACTGCATCAGTGCCTGCGCGCCAGCCCCACACAAACCCTCACCCATGGCTTCTTCGTGGCCATGCTAGAGCGCCGGCCCCCGGGGGAGGTGGTGGAGAAAGAGGATGGCACCAACACACTCCTCCCTGCATCAGTGACATCAGCCCCTGACAGCAAGGGCGAGGAGGAAGCCCCCCATCCCAGCACCCCACAGACGGAGGctaagaagaagaggaagaggaagagagggaaagggaaggCCAGGGTCCTAGCGGACTGA

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K15264 NSUN5, WBSCR20, RCM1; 25S rRNA (cytosine2278-C5)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005438 True 1380 mRNA 0.65 9 1570753 1574756

Neighbor

gene id symbol gene type direction distance location
AMCG00005439 hip1,LOC102790400 coding downstream 33885 1523660 ~ 1536868 (-)
AMCG00005440 NA coding downstream 47468 1517483 ~ 1523285 (-)
AMCG00005426 NA coding downstream 84925 1480176 ~ 1485828 (-)
AMCG00005428 rad51c,LOC107691693 coding downstream 102878 1462232 ~ 1467875 (-)
AMCG00005427 ppm1e,LOC102780278 coding downstream 134445 1431904 ~ 1436308 (-)
AMCG00005445 fzd9,LOC106567714,LOC106612580,LOC107713270,LOC107691950,LOC107709816 coding upstream 60989 1635745 ~ 1637496 (-)
AMCG00005446 NA coding upstream 85271 1660027 ~ 1666365 (-)
AMCG00005447 LOC106580668 coding upstream 100488 1675244 ~ 1685460 (-)
AMCG00005460 NA coding upstream 122521 1697277 ~ 1707786 (-)
AMCG00005462 NA coding upstream 180157 1754913 ~ 1774451 (-)
G152197 NA non-coding downstream 112091 1458237 ~ 1458662 (-)
G152178 NA non-coding downstream 172361 1397341 ~ 1398392 (-)
G152085 NA non-coding downstream 500097 1065459 ~ 1070656 (-)
G152071 NA non-coding downstream 561014 998354 ~ 1009739 (-)
G151979 NA non-coding downstream 879811 690659 ~ 690942 (-)
G152320 NA non-coding upstream 117993 1692749 ~ 1693555 (-)
G152335 NA non-coding upstream 171197 1745953 ~ 1752738 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding upstream 366267 1941023 ~ 1946800 (-)
G152424 NA non-coding upstream 592848 2167604 ~ 2175954 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding upstream 720077 2294833 ~ 2318672 (-)
G152277 NA other downstream 63125 1505940 ~ 1507628 (-)
AMCG00005419 NA other downstream 194280 1371342 ~ 1376473 (-)
G152133 NA other downstream 235313 1219327 ~ 1335440 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other downstream 1450206 108398 ~ 120547 (-)
AMCG00005399 NA other downstream 1471083 94352 ~ 99670 (-)
AMCG00005461 eif4h other upstream 133927 1708683 ~ 1723500 (-)
AMCG00005532 NA other upstream 622598 2197354 ~ 2329684 (-)
AMCG00005517 NA other upstream 831769 2406525 ~ 2410247 (-)
AMCG00005491 supt6h,LOC107603297 other upstream 1297750 2872506 ~ 2890448 (-)
G152645 NA other upstream 1497104 3071860 ~ 3090714 (-)

Expression


Co-expression Network