AMCG00005439 (hip1,LOC102790400)


Basic Information

Item Value
gene id AMCG00005439
gene name hip1,LOC102790400
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1523660 ~ 1536868 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005439
CAGGCAGTGAGCATCAACAAGGCCATCAATACACAGGAGGTCGCTGTCAAGGAGAAGCATGCGAGAACCTGCATCCTGGGCACGCACCATGAGAAGGGCGCGCACACCTTCTGGGCGGCTGTGCACCGGCTGCCCCTGTCCAGCAACGCAGTGCTCTGCTGGAAGTTCTGCCATGTCTTCCACAAGCTGCTGCGAGACGGGCACCCCAACGTGCTGAAGGACTCCATGAGGAACAAGCCTGACCTGGGAGACATGAGCAGGATGTGGggACACCTGAGCGAGGGCTACGGCAGACTGTGCAGCATCTACCTCAAACTCCTCATTACAAAAATGGACTTCCATGTCAAGAACCCCCATTTTCCCGGCAACCTGCAGATGACGGACAGGCAGCTGGACGAGGCCGGCGAGAACGACGTCAACAACTTCTTCCAGATGACCGTGGAAATGTTCGACTACATGGAGTGCGAGCTCAACCTCTTCCTGGCCGTGTTCAGCTCCTTGGACATGTCCCGCTCGATGTCTGTGACGGCGACTGGGCAGTGCCGCCTGGCCCCCCTGATCCAGGTGATCCTGGACTGCAGCCACCTGTACGACTACACCGTCAAGCTGCTCTTCAAGCTTCACTCCTgcCTCCCTGCCGACACCCTGCAGGGCCACAGAGACCGTTTCCAGGAGCAGTTCAAGAACCCCGTGGTGGTCATCCCCCTGGAGGCTTCGTCCCCCGACAGCGAGCCACTGGTGGAGACGGAGGACCTGGTGGACACGGACACCCCGCCCCAGCCGAGCTCCCTGGAGAACAAGTTCGATGACCTCTTCGGCACGTCCTCCGCCACCGACCCCTTCAACTTCAACAGTCAGAACGGCACCTACAAGGATGACAAGGACCGCCTGATCGAGCAGCTGTCCCGGGAGATCCGCGCGCTGAAGGAGGAGCTGGAGACGTTCAGGCTGGAGagCGGCCGGTTGGTGCAGGCCCTGCGCAGCCAGGTGAGCGAGCTGGAGGCGGAGCTGGCAGAGCAGGCCCACCTGAAGCAGCAGGCGCTGGGCGAGGGAGAGTTCCTGCGCGCCGAGCTGGAGGACCTGCGGCGCGTCAAGGAGGACACGGAGAAAGAGCAGCGCTGCCTGACCGAgatagagaGGAAGGCCCAGGCCAACGAGCAGAGGTACACCAAGCTGAAGGAGAAATACACCGAGCTGGTGCAGAGCCACGCGGACCTGCTGAGGAAGAACGCCGAGGTGATGAAGCAGATGACGGTGGCGCGGGCGGCGCAGGGCGAGGTGGAGAGCGTGCGACACGAGATGCAGGAGAAGGTGAAGCTGGCGAAAGAGGAAGCGGAGCTCCGGGTACGAGGGACGGggaggtggagggagggagggagggaggaagggggagGGATGTGGTGTCAGTGCGTTCTGTGCCTGCGCGGTTCTCTGAGTGTGTTGTCTGCGTCTctgcaggagcaggagcaggtgGAGCAGCTGCAGGTGCTGCAGAGGGATCTGTGTTCCAGCAGAGAGGAGCTGGAGACGCTGAGAGCCACTGTGGTCTCCTCACAGCAGGCGAGCGAGGAGCTCAGCGGGCGCCTGGAGGCCCTGCAGGGGGAGAAGGAGTCTCTGAGTGACAGGCTGGTGCAGAAGGAGGCGGAGCTGTCCGGACTGGGGGCGGAGCTTCAGCGCGTGCAGCAGAGCCTGGCCAGTGAGAGGGAGAGCGGCgagAGCCGGGAGCAGGCCCTGGAGAGCCAGCTGGCGAGTGCGCGCTGGGCTGCCCTGCAGGGGGCGCTGGAAGAGGCGCAGCGCATTGTGCAGGACTCGCTGTCCCGGCTGGATGACCCCGCGCACATCAGCTGCACCAGCTCCGCCGATTACCTGGTGTCTCGGAGCCAGGCCGCGCTGGAGTGTGTTGACCGGCTGCAGGCCGCCCAGGACCGCTACCTGACCGACCGCACAGatgTGTCGGAATTGCTACGCTCTGTGGCCCACTTTGGCCACCTGGTTGGCGATACGATAGTGCAGGGCAGCGCCACCTCGCACATGGTGCCCCTGGAGCAGGCAGACTCGCTGTCGGAGGCGGTGCGGGTGTGTGGCACCGAGGCCCTGGGCTTCCTGAGCCGGCTGAAGGAGGAGGAGTCGCTGGGCAGTGTGGACAGCGCCCGACTGAGGGACCACCTGGCCAGCATCCAGGCCATCGCCGAGaagtTGCGCCCGCGTGGGCTGGAGCTGCAGCAAGGGGAGCTGGGGGACCTGGTGGAGCAGGAGATGTCCGCCACCTCCATTGCCGTGGAAGCAGCTGCTGCCAGGATCGAGGAAATGCTGAGCAAGTCCAGGGCTGCTGACTCCGGGGTCAAGATGGAGGTCAATGAGAGGATCCTGGCCTCCTGCACGGAGCTGATGCAGGCCATCAAAGTGCTGGTGCTCTCCTCCAAAGACCTGCAGAGGGACATCGTGGAGAGCGGGAGGggGGCGGCCTCCACAAAGGAGTTCTACGCCAAGAACTCGCGCTGGACCGAGGGGCTCATCTCGGCATCCAAGGCGCGCCGGGCTCAGCTCCATTACTGTGTTTTACTGGTTTATGTCCATGTCCACTGGGACACggACGCTGCGGACCTGGTGGTGCAGGGCAAGGGCAAGTTCGAGGAGCTGATGGTGTGTTCCCACGAGATCGCAGCCAGCACTGCGCAGCTGGTGGCCGCCTCCAAGGTGAAGGCTGACAAGGACAGCGGGAACCTGGCCAAGCTGCAGCAGGCGTCCCGGGGGGTCACCCAGGCCACCGCCAGCCTCGTGGCATCCACCAAGTCCGGCAAGTCCCAGATCGAGGAGAAAGACACCATGGACTTCTCCAGCATGACGCTGACGCAGATCAAGAGGCAGGAGATGGACTCGCAGGTGCGTGTGCTGGAGCTGGAGACCTGGCTGCAGAAGGAGCGCGAGCGTCTGGGCGAGCTGAGGAAGAAGCACTACGAGCTGGCGGGCGTGGCGGAGGGCTGGGGCGAGGAGGACGgtccCCAGACCCACACTGTGGGCTCGGAGACACCGggttcctctctctgtgtctgttgtaACCGCAGTGGAGCCGGAGACTCGAGGACTGGAGACGAGGCGGGGGAGACAGCTGTGCCCTGCATTGCCCTGCCCCCCCCAGGCGTCGCTGACACACCCAGGCAGATCCTTGCAGCTCTGCGTCTCCCCAGGGCCGTGTGA

Function

symbol description
hip1 Predicted to enable actin filament binding activity; anion binding activity; and clathrin binding activity. Acts upstream of or within chordate embryonic development and response to yeast. Predicted to be located in cytoplasm. Predicted to be active in actin cortical patch; clathrin-coated vesicle; and presynapse. Predicted to be extrinsic component of postsynaptic membrane. Orthologous to human HIP1 (huntingtin interacting protein 1).

NR:

description
PREDICTED: huntingtin-interacting protein 1-like isoform X2

GO:

id name namespace
GO:0001878 response to yeast biological_process
GO:0009790 embryo development biological_process
GO:0005543 phospholipid binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K04559 HIP1; huntingtin interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005439 True 3198 mRNA 0.64 28 1523660 1536868

Neighbor

gene id symbol gene type direction distance location
AMCG00005440 NA coding downstream 375 1517483 ~ 1523285 (-)
AMCG00005426 NA coding downstream 37832 1480176 ~ 1485828 (-)
AMCG00005428 rad51c,LOC107691693 coding downstream 55785 1462232 ~ 1467875 (-)
AMCG00005427 ppm1e,LOC102780278 coding downstream 87352 1431904 ~ 1436308 (-)
AMCG00005417 NA coding downstream 223113 1299366 ~ 1300547 (-)
AMCG00005438 NA coding upstream 33885 1570753 ~ 1574756 (-)
AMCG00005445 fzd9,LOC106567714,LOC106612580,LOC107713270,LOC107691950,LOC107709816 coding upstream 98877 1635745 ~ 1637496 (-)
AMCG00005446 NA coding upstream 123159 1660027 ~ 1666365 (-)
AMCG00005447 LOC106580668 coding upstream 138376 1675244 ~ 1685460 (-)
AMCG00005460 NA coding upstream 160409 1697277 ~ 1707786 (-)
G152197 NA non-coding downstream 64998 1458237 ~ 1458662 (-)
G152178 NA non-coding downstream 125268 1397341 ~ 1398392 (-)
G152085 NA non-coding downstream 453004 1065459 ~ 1070656 (-)
G152071 NA non-coding downstream 513921 998354 ~ 1009739 (-)
G151979 NA non-coding downstream 832718 690659 ~ 690942 (-)
G152320 NA non-coding upstream 155881 1692749 ~ 1693555 (-)
G152335 NA non-coding upstream 209085 1745953 ~ 1752738 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding upstream 404155 1941023 ~ 1946800 (-)
G152424 NA non-coding upstream 630736 2167604 ~ 2175954 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding upstream 757965 2294833 ~ 2318672 (-)
G152277 NA other downstream 16032 1505940 ~ 1507628 (-)
AMCG00005419 NA other downstream 147187 1371342 ~ 1376473 (-)
G152133 NA other downstream 188220 1219327 ~ 1335440 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other downstream 1403113 108398 ~ 120547 (-)
AMCG00005399 NA other downstream 1423990 94352 ~ 99670 (-)
AMCG00005461 eif4h other upstream 171815 1708683 ~ 1723500 (-)
AMCG00005532 NA other upstream 660486 2197354 ~ 2329684 (-)
AMCG00005517 NA other upstream 869657 2406525 ~ 2410247 (-)
AMCG00005491 supt6h,LOC107603297 other upstream 1335638 2872506 ~ 2890448 (-)
G152645 NA other upstream 1534992 3071860 ~ 3090714 (-)

Expression


Co-expression Network