AMCG00005441


Basic Information

Item Value
gene id AMCG00005441
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1667718 ~ 1671361 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005441
ATGGCGCGGCGGCCGAGCCTGGAGTCCCTGGAGAACCAGCTGCTGTGCCCGGTGTGCCTGGAGGTGTTCGCCGAGCCGCTGATGCTGCAGTGCGGCCACTCCTACTGCAAGTCCTGCGTGCGCTCCATGACCCTGGACCCCTTTGGCCAGCTGCAGTGCCCCGTATGCCGCTGCGAGGTGGACGGTGACAGCCCCCCACCCAACGTCACACTGGCCCGCATCGTGGACGCCCTGCGGGAGCTGAGCGGCGCCCAGCCCGAGACGGAGACCTGCCTGCAGCACCACAACCCCCTGAGCCTGTACTGTGAGGACGACCACGCGGTCATCTGCGGGCTGTGCGGCAGCATCGGGGCTCACCGCGGGCACAAGATCACGCCACTCGGCAGCGTCTACAGCCGCATGAAGGAGGACATTTCCTGTCTGATGACGGAGCTGCAGACACAGAAGCGGAAGCTGGAGCAGCAGATCTGCAAGATGGCCTACAATAAATCCCGCATAACCAACGAGTCAGACGTGTTCAAGTGGGTGATCCGGAAGGAGTTCGGGGAGCTGCGCCGCTGCCTGGAGGTGGAGGAGGCCCGGTTCATGGAGACGGTGGAGAGCAAGGCGGCCGCCCTCCTCGGCTCCATACAGGGCCAGGTGGACGAAATGACGCAGGTGCTGGGCAAGTTCCAGGAGGCCGAGGGGACGCTGGAGCGGCTCAACAACGAGAGCCACCTGGGCTTCATCGCAGTGAGTCCGGGGCAGGGACAGGCACAGGAGCGCGGGGCGAAGTACGGATCCATCGCCCCTCGGTTCAGAGAgtcgcagcagcagcagcagagaggagagcGGACCTACAGCGCCATCGCCTTCAAGCCCGGTTTCCACCACGACGACATCAAGATCACCGTGTGGAAGAGACTGCACAGGAGGGTCCTGCCAGCCCCGGAGCATCTGAAGCTGGACCCGCTGACTGCCCACCCCATGCTGCAGCTGAGCCACAGTGACACAGTGGTTGAGTGCGGTGCGGTGCCCACCCGGCACCCCAACAACCCCGAGCGCTTCAGCTACAGCTACTGCGTCCTGGCCACCCGCGGCTTCTCCTCTGGCAAGCACTACTGGGAGGTGGGCGTGGAGGGCAAGCCCAAGTGGCGACTGGGGCTCGTCAAGGGCACCACCGGGCGCAAGGGCAAGCTGCCCAAGAGCCCGGAGAGCGGTGTGTGGCTGATCGGGCTCAAGGAGGGCCGCCTGTATGAAGCCTTTGCCACCCCCCGCGTTCCCCTGCCCCTGTGCGCCCAGCCGGCTAAGATTGGCGTGTTCCTGGACTACGAGAAGGGCGAGATCTCCTTCTACAACGCGGACAGCCCCCACGAGCTGGGCTTCCTCTACAAGTTCCAGGCGGAGCTGCAGGGCAAGGTGTACCCCCTGCTGGACGTATGCTGGCACGGGAGGGGTGCCAACAAGCAAGCGCTCACCCTCCTGCAGCCCCCTGCCGACAGGTAG

Function

GO: NA

KEGG:

id description
K12024 TRIM50_73_74; tripartite motif-containing protein 50/73/74

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005441 True 1485 mRNA 0.65 6 1667718 1671361

Neighbor

gene id symbol gene type direction distance location
AMCG00005442 NA coding upstream 54642 1598525 ~ 1613076 (+)
AMCG00005443 NA coding upstream 70067 1587411 ~ 1597651 (+)
AMCG00005444 NA coding upstream 83006 1579830 ~ 1584712 (+)
AMCG00005433 NA coding upstream 89077 1573638 ~ 1578641 (+)
AMCG00005432 NA coding upstream 100514 1557840 ~ 1567204 (+)
AMCG00005458 rfc2,LOC107669364,LOC107561059 coding downstream 20776 1692137 ~ 1697143 (+)
AMCG00005459 NA coding downstream 52648 1724009 ~ 1734069 (+)
AMCG00005457 NA coding downstream 69310 1740671 ~ 1745867 (+)
AMCG00005430 NA coding downstream 226516 1897877 ~ 1908710 (+)
AMCG00005487 NA coding downstream 344655 2016016 ~ 2043288 (+)
G152198 NA non-coding upstream 205779 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 208971 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 413759 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 610323 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 653338 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 584004 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1400589 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1512460 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1527971 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1588849 3260210 ~ 3260429 (+)
AMCG00005434 NA other upstream 150138 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 288416 1376468 ~ 1379302 (+)
G152159 NA other upstream 299762 1367014 ~ 1367956 (+)
G151969 NA other upstream 1130355 536751 ~ 537363 (+)
G151967 NA other upstream 1267853 398925 ~ 399865 (+)
G152267 NA other downstream 74599 1745960 ~ 1748934 (+)
G152337 NA other downstream 128450 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 258094 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 832549 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 1173856 2845217 ~ 2849608 (+)

Expression


Co-expression Network