AMCG00005442


Basic Information

Item Value
gene id AMCG00005442
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1598525 ~ 1613076 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005442
GGAGTTTCGGGGTCGCACGGAGTGGTGCCGGCGGAGCGGATCTCCCGCCATTTTTCAACGAGCGTTTCGCCCTCTTGTTTGTTTTCGCACCCGTACCGCACGCCCAGCGCCCTGCCTGCCTGCCGGGGGAGCGAAGTGAGCCGAGACGCAGACGCCGAGCTCGCCTCCCGAGCGGACGCCAGTCAGAGAGAGGGCCAGGAGAAAGCCCGCCAGACCCCCTGTCGAGCTCCTCCGCCGCCGCTGCGAGAGAGACCGCAGTCCCCCGCTCGTCATCCCCGCCAGCGCAGAGCACGGGCTGCCCGGGAAGCCGACTCGCCTCTCCCGGTTGCCGCCCCGTCGTTTCCATCCCCGGCACGGATCAGGACTATGACCCTGCCGGCTGCCTGAGCcaggaagggggagagagaccgAGACAGAGAGGcggtgtgtgttgttgttttgcacgGGGGAGCCGGGCTTCTCTGTATGGCTGCGGAGTCCCGGGAGGAGCTCTGCGAAACCCGTGTCTGTAACCGGCGCTAAGGCCCCACTCTCGCGTCCGTGGGACCGAGAGCCTCGGCTCCGTCTGTATCCGTGGGCATCGCTGCCGCTCCACCGGGCCCGATGGCACCGCTGCTGGGCCGGAAGCCCTACCCGCTGGTGAAGCCGCTCGCAGAGCCGCCAGGCCCCGAGGAAGAAGTCTACATCATCGAGCACACGAAGGAGGCCTTCAAGAACAAAGAAGAGTATGAGGCGCGGCTGGAGAGGTATAGCGAGCGCATCTGGACGTGCAAGAGCACTGGGAGCAACCAGCTCACACACCTGGAGGCCtgggaggaggagcaggaggtcACCGAACTGCTGAAGGAGGAGTACCCCCTGTGGTTCGAAAAGCCTGTGCTGGAGATGGTCCATCACAACACCATCTCTCTGGACAAGCTGGTGGACCAGGCCTGGGTGGAGATCCTCACCAAGTACGCCGTGGATGAGGAGTGCGACTTCCTGGTGGGGAAGGACAAGACTCTGCGTGTGAAGGTGGTGAAGGTGCACCCCCTGGAGAAGCCAGAGGAGGACCCAGCGGAGAAGAAGCTGGAGGGGGCCTGCGACTCGCCATCCAGTGACAAGGAGAACGCCAGTCAGGAGAACCAGAAGAAAGAGCCACTGGGCAAGGAGGAGGAGAGCCGCAGGGACAGCCTCTGTGACAGAGCCCGGCGCTCCCCGAGGAAACTGCCCACCAGCctgaaggaggagaggaagaagtgGGTCATGCCAAAGTTCCTGCCACACAAGTACGATGTCAAGCTGATCACCGAGGACAAGGTCATCAGCAGTGTCCCGGCCGACAGCCTGTTCCGCACAGAGCGCCCCCCCAACAAGGAGATCATGCGCTACTTCATCCGCCACAACGCCCTGCGCCTGGGCATCGGGGAGAGCGCCCCCTGGGTGGTGGAGGACGAGCTGGTGAAGAAGTACTCCCTGCCCAGCAAGTTCAGTGACTTCCTGCTGGACCCACACAAGTACATGACCCACAACCCGTCTGCCAAGCGCCGGAGCCTCAGCTCTCCGGAAGGGAAACCCCCCAAGAAGCTGAAGGGTGGGGAGATTGGCCCGGACGGGGAGGTGCTAAAGGAGAAGGGAGAtaaagagaagaggaggagaaagaagaacCCCCTCGGCCCCACACTCTGGGGCCATGTGCAGATGAAGAAGGTGAACGGCTCTCCTCTGAAGGTGAAGAACGGCTCCCTGAAGAAGCCCGGGGAGGAGGGCGCAGAGGGGCtggatgacgatgatgatgacgTCATCATTGTGAGCTCAGGCTTCGGCGTGGGTAACAAGAAGAGCCCCCGGGCCGCTGGCAAGTCACCACGCAAGAGGAAACGCAGCGACGGCAAGCAGGCCAGCGGCCGGAAGAGCGGCAAGGTCCTCAACGGCCAGAAGGCATCCAGGAAGGAAGGCAAGGGGGCCAAGAAGCCGCGCATGAAGCAGATGACCTTGCTGGACATGGCCAAGGGCAGCCCGTCACGCAGCCCCCAGAAGAGGCCCAGGACCCCGGGGGGAGGCACGCCCAAGCTGGGCAAGCCCCTGCCGCCCATGGCCCTCCACTTGCTGCGCTACTACAAGGAGAACAAGGGCAAGGAGGACAAGAAGAGTGCACTGTCTGGCCTGGTGTCCAAGGCGGCCAAGGTGCTGTCCCAGGAGGACCGTGGCCGGCTGCCCGAGGAGCTGCGCGATCTGGTGCAGAAGCGCTGGGAGCTGCTGGAGCACAAACGGCGCTGGGCGGCCATGAGCGAGGAGGAGAAGCAGGATGTGCTGCGCAAGAAGCGCCAGGAGATCCGGGAGAAGCTGCGTGAGAAGGCCAAGGAGCGGCGCGAGCGTGAGATGCTGGAGCGTCGTGAGAAGCTGCGCCGCTACGAGGACCAGGAGCTGGAGGGGGGCGTCCTGCCCAGCTTCAAGCTGGTGGACATGCCCGAGGGGCTGCCCAACGCGCTGTTCGGCGACGTGGCCATGGTGGCCGACTTCCTCAGCTGCTACGCCGGCCTGCTGATGCCAGACGACCAGTACCCCATCACTGCCCCGGCGCTCATGGAGGCCCTGGTGGCTGACAAGGGCGGCTTCCTGTACCTGAACCGCGTGCTGGTGGTGCTGCTGCAGACGCTGCTTCAGGATGAGCTGGCCGAGGGCTACAGCGAGCTGGACATGGTGCTGTCCGAGATCCCACTCACGCTGCACTCCGTGTCCGAGCTGGTGCGCCTCTGCCTGCGGCCCTGGGACGCCCAGGACGAGAGTGCGCAGGGGTCAGAGGACTGGGCGCTGGGCGGCTTCGACGACGTGGTGAGCACTGAGTTCCTGGAAAAGCTGGAGACAGCGGAGGTGTTTGAGCTGACCCCCCAGGAGAAGGTCCACCTGCTGGTGGCGCTGTGCCACCGCATCCTCATGACCTACTCAGTGGAGGACCATGTGGACGACATGCAGCAGCGCTCGGCCGAGCTGTGGAAGGAGCGTCTGGCTACGCTGAAGGAGGTGAATGACCGCAAGCGTGCGGAGAAGCAGCGGCGCAAGGAGCAGATGGAGGCTAAGGGTGCCGGCGGGGGGGCCGAGGGCTGGACGAAGGTGGAGGGAGCGGGGGGTGCCACCCCTGCACCTCCAGCCCCAGCGCCGGCCAAGGCAGACCGGAAGAAAGCCCCTGCAGcagagaagaaggaggcaaaggGCAAGACTGAGCCGGAGCCCGAGGACATGATCAGCACGGTGAAGAGCCGCCGGCTGCACGTCATCCAGGCcaagagggagaaagaggagcAGGAGCGGCAGAACAAGGAGCGCATGGAgaaggaggcggaggaggagagGACCCGCAGGCAGAAGGCGGCGGCCGAGAGGGCGTTCCAGGACGGCATCACCAAGGCCAAGCTCGTGCTGCGGCGCCTCCCGCTGGGTACCGACCGCAACCACAACAGGTACTGGCTGTTCTCCGACGTGGTGCCCGGGCTGTACATCGAGAAGGGCTGGGTGCATGACAGCATTGAGTACAGCTTCACTCCACCCCCCGAGGCCAAGAAAGAGGAGCAGGACGCCGAGGTGGAAAAGGAGGAGGACGACAGTGCGGAGAGCAGCGTGAGTGAGGCCGGTCCGCAGGGGGCGCTGGTCACCCCTGAGTGTATAGAGACAACCATCCCCAAGCAGGGCCAGAACCTCTGGTTCCTGTGCGACTCTCAGAAGGAGCTGGACGAGCTGCTGGAGGGTCTGCACCCCCAGGGCGTGCGGGAGAGCGAGCTGCGCAGCCGGCTGCAGGCCAAATACCAGGACATCCTGCGCTCTATCTACCTGGCGCGCAGGCCGAACATGGGCCTGAAGGCCTGCGACGGCCACCAGGAGCTGCTGAAGTTCCTGCGCAGTGACGTCATAGAGGTGGCGCTGCGGCTGCAGAAGGGCGGCCTGGGCTACATGGACGACACCACGGAGTTCGAGGAGAGGgtgCGCTCTCTGGACAACCTGAAGGACTTTGGCGAGTGCATCATCACCCTGCAGGCCAGCGTCATCAAGAAGTTCCTGCAGGGCTTCATGGCACccaagcagaagaaaaagaagaaacagacGGGCGAGGagagcagcggcagcagcaagGCTGAGGAGGTGGATGAGGAGAAGAGGCTCGTGGAGGAGGCCAGGGTGGCCACGGCGGTGGAGAAGTGGAAGGCCATGATCCGCGAGGCACAGACCTTCTCACGCATGCATGTGCTGCTCGGCATGCTGGACGCCTGCATCAAGTGGGACATGTCTGCCGAGAACGCCCGCTGCAAAGTGTGCCGCCGGAAAGGTGAAGATGACAAGTTGATCTTGTGCGACGAGTGCAACAAGGCCTTCCACCTGTTCTGCCTGCGGCCGGCGCTCTACTCCATCCCCGACGGCGAGTGGCTGTGCCCAGCCTGCCAACCCGCCATCGCCCGCCGATGCTCCCGGGGGAGGAATTACAACGAGGACACAGAGGAAGATTCGGAGGAGTCTGAGTCTGAGGAAGAGGagtctgaggaggaggaggaattgGAGGAGTCGGACGAGGACAAGCCCATCGGACTCAGCCTGCGCTCCCGGAAGGCAGCGAAGGGCAAGCAGTCGTCCACACGGCTGAAGCAGCACAGCGGCAAGAGCAAGAAGCCGTCCCCCCCCAGTGCCCGTGGCGGCCGGCACAAGGGCCCCCCCAGTAGCCCGGCCGACATCGACGAGCTGGTGCGTCAGAGCAGCAGGCAAGGCGTGAGCCGGCAGGCGCTGGAGCTGCAGAAGTGCGAGGAGATACTGCACAAGCTGCTCAAGTTCCGCTTCAGCTGGCCTTTCAGAGAGCCCGTGTCACCCGAGGAGGCCGAGGACTACCTGGACGTGATCGCGCAGCCCATGGACTTCCAGACCATGCTGGGCAAGTGCGGGGCTGGCCGCTACCGGCACGGCAGCGATTTCCTGGAGGACCTGAAGCTGGTGTTCTCCAATGCCGAGGAGTACAACCAACCGGGCAGCGCCGTGCTGTCCTGCCTGGCCAAGACCGAGCAGTGCTTCgtggagctgctgcagaaacACCTGCCCGGGCTGAGCTACCTGCGGCGCCGGCCGCGCAAGAGAGCCGGGCAGAACAGCAGCGGCAACCAAGGCCACGCACAGTCTGAGGAAGAGGTggagagtgaggaggaggaggaagaggtggGCCGCAAAACTCGCAATAGTAAGCGGGGGAATGCCAGTAAACGGCGAGggagggtggaggaggaggaggaggaggaggaggaggaagaagaagaagaggaggaggaggaggaggaagaggtggtggtggtggtggagtcGAAGGGGAGGAGAGGAGCCAGTAGAGAGCTGAAAACCAGGCAGAGCAAGCGCAGTGCCTCGAGTCGCAAGAGAtacgaggaggaggagagtgaagaggaggaggaggaagaagaagaagaagtagaagTGGTGGTGGAGTCGAAGGGGAGGAGAGGGACTGGTAGGGAGCTGAAAACCCGGCAGAGCAAGCGCAGTGCCTCGAGCCGCAAGAGatacgaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggagagtgaaGAGGAGACCAGGGGTGCCGGCCGACGGAAAAGCAAACGAGCCGCGGCCGCCTCGAGGGATTACCGAGAGCAGGAGAGCGACAGCGAGCGGGAGGCCAGCGGCAAGAGGAGGCAGGCCACACGCAGGCCGCCccaagaggaagaggaggaggaggaggagagcgaggaagagcagcagcagcaggagggggaggaggaggaggaggagccccGAGAGAGCTGCAGAACTCGGCACAGCAAGAGAGGGGCTCGGGGGGAGAGCGGCGAGGAGGACGACGCGGCCGACCAGCGACTTTCCAAACGGAAAAGGCAAAAACGCTGCCAATGA

Function

GO: NA

KEGG:

id description
K11658 BAZ1B, WSTF; bromodomain adjacent to zinc finger domain protein 1B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005442 True 5919 mRNA 0.64 20 1598525 1613076

Neighbor

gene id symbol gene type direction distance location
AMCG00005443 NA coding upstream 874 1587411 ~ 1597651 (+)
AMCG00005444 NA coding upstream 13813 1579830 ~ 1584712 (+)
AMCG00005433 NA coding upstream 19884 1573638 ~ 1578641 (+)
AMCG00005432 NA coding upstream 31321 1557840 ~ 1567204 (+)
AMCG00005435 NA coding upstream 91808 1496852 ~ 1506717 (+)
AMCG00005441 NA coding downstream 54642 1667718 ~ 1671361 (+)
AMCG00005458 rfc2,LOC107669364,LOC107561059 coding downstream 79061 1692137 ~ 1697143 (+)
AMCG00005459 NA coding downstream 110933 1724009 ~ 1734069 (+)
AMCG00005457 NA coding downstream 127595 1740671 ~ 1745867 (+)
AMCG00005430 NA coding downstream 284801 1897877 ~ 1908710 (+)
G152198 NA non-coding upstream 136586 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 139778 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 344566 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 541130 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 584145 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 642289 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1458874 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1570745 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1586256 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1647134 3260210 ~ 3260429 (+)
AMCG00005434 NA other upstream 80945 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 219223 1376468 ~ 1379302 (+)
G152159 NA other upstream 230569 1367014 ~ 1367956 (+)
G151969 NA other upstream 1061162 536751 ~ 537363 (+)
G151967 NA other upstream 1198660 398925 ~ 399865 (+)
G152267 NA other downstream 132884 1745960 ~ 1748934 (+)
G152337 NA other downstream 186735 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 316379 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 890834 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 1232141 2845217 ~ 2849608 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000028_05220487_05239955 BAZ1B coding CI01000028 null 5219611 ~ 5240699 (-)