AMCG00005443


Basic Information

Item Value
gene id AMCG00005443
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1587411 ~ 1597651 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005443
ATGGCGGAGGGCTGGAACAGCGACACCGGAGAGGCGGTTTACCGGTCCCGGGACCCGGTCAAGAACCTGCAGATAAGGTACCGGGCGCACAAAGACGCGGTTCCAGTGCGGCTCCAGCGCGTCACCTCCGTCACGGTGTTCTCCCAGCAGCTCCGGGAGCAGGCCTCGGCCCAACAGGAGCGGGGCATGATCGAGCTCTCCACTTTCAGCACCCAGGCCGGCTCAGCGGGAGGGCACCATGATGACAAGGAGGAGCTGACGGTGGGCTGGCAGGAGAAGCTGTACAGTCAGtTCGAGATGGACCTGTTCCGGTCCGAGTCATCCTGCCAGAGCCCGCTGGACCGGCAGTACCACGCCGAGGTCCTGGCTCTGGAGCGGGCGGGGGGGCGGCCCAACCGCAGGATCTTTACCTACACCGACTACGACCGCTACACCAACCTGCAGGAGCACAATGAGTCGGTGCTGGTCCCAGGACAGCAGCCCTCTTCCTTGGCGGAGCGGATGGCCAGTGTCAGGAGGCGGAGACAGGAGAGACGTGCCGTGGAGGGCAGCCTGCCCAAGTCACGCCTCATCACCTGGGAGCCGTCTGAGGAGTTTGTGAAGAACAACCACGTGATCAACACGCCGGTGCAGACCATGCACATCATGGGGGACCTGGGGCCCTATGGCATgCTGGGCCACAAGGACAACGAGGTCATGCTGTGCACGGTGAGGGTGGACAGCAACGGGGTCATCACCGTCCAGCCGGACTTCAACAACAAGGGACCTTACAGGTGTGTCACGCCAGAGCTGTGGCAATACACCCTGGAGGACGTGTCTAAGAGCATCAGCCCGGAGGAACAGGAGCGGGAGCAGCGCATGTACAAGGACCCTCCCCCGGGCATGCTCCGCCTGCTGGTGAACGGAGAGATCGTCTCAGCCAAGGGCTACGAGTACGACAACCTGTACGTGCACTTCTTCTTCGAGCTGCCTGAGAACTGGACCAGCCTGTCCTCCCAGTCCCTCTCCGGTGTCACTCAGACCTGCAGCACGCGCTCAGAGGGCAGGGAGAACATTGCCTACTTCTCGTACCCCTTCAGCTTTGAGGCCTACTTCAGGAAGGAGGACGAGACAGAAGACTCTGTGCCCCAGTGGCCAGTGCTGTACTTCGAAGTCCTTTCACTGGGTTTCTGGCAGCGCTACAGGACTGAGGGCTACGGCTACCTTgtcatcccccccaccccagGATGCCACAATCTGACCTGCTCCACATGGCGGCCGGTGCAGCCTGGGACGGTGGCCGAGCTGCGGCGCTTCTTCATCGGAGGCGCCCCCGAGCTGGAGGACATCAGCTATGCCCGCGTGCCCGGGACCTTCAAGGGCGATCGGCTCAGCCGTTTCGGTTTCCGCAGTGAGACCACGGGCAGTGTGACCTTCACCCTGCACTGCATCCAGCAAGCCCGGGCCTTCATTGATGCCAGTGCCCTGAAGAAAAGGAGGCAGAGTGTGCTGGACCAGCTGGGGGGCTTCAGTAAGCAGAGCACCACCAACAATGTGCTGGAGGCGTTCCTGAGGGCGCAGAGACGCATGCAGGAGGCCCGGGAGAGCCTCCCCAGCGACCTCCTCAACACCACAGCGCCCCCCACCTCCGAGACCACAGCGTGACCCCCCAGCAGAGTCGACTCAGAGCTGCTGCATCAAACCCCTTGAGGGTCAGAGCGGAGTCTCTAAAAGCCTGCAGTCAAAACACCTGCAGACCAGCTGCAAGAAAACTGTtcttaaagagagagagagaaacaccaCCTTATTGTGCACAAGCAGGACAAATAACGTCTGTTTTTAGAAGTACAAGATCCATGCAACCCATTGGTAATGGATATCCAATCAGAGTTGTGCTTAAAAACGGGCTCGCAATCTTGGTCCTggtcttgttttttgttccatcccagctctcaattacttaattgaaccttgaACTCTtaaaaagagttggttctttaataagttaataCAATTCTAAACTTAAAACcactttaaagtaattaaaaggctcagatataggaaattattatttcaattaagtaattgagagctcggttggaacagaaaccagggttgggaaccactgcttaAAAACGATGGTGCCAAGAGAATTCATTATTACTGCGGTCAAATCTTTCACAAGTTTCTACAACgtgatttaaatacataagaTACAGCTGCCTCCGAGCTTCttcaattacatacatttttaggCCGGCTGTAACAGTCTTGGTCTCGGCCCTGATCTGTTTACCCTGAACTACAATGAATAGTTTAAAAGTCTCAAACACTTCAtatgatatttatatttgatattacagtattcatcagttttgtgttttccaaTGAGAGTGGTACCCAACCTAGACATGTTCTTTGcgattttgtgtttatatttcagttGGAGGGTCACTTTATAACTTTTTGGGGAATGTTATTGTTTATACgatttgtaaatattaaagtCAATTATATCTTtca

Function

GO:

id name namespace
GO:0060030 dorsal convergence biological_process

KEGG:

id description
K19332 MKS1; Meckel syndrome type 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005443 True 2502 mRNA 0.54 17 1587411 1597651

Neighbor

gene id symbol gene type direction distance location
AMCG00005444 NA coding upstream 2699 1579830 ~ 1584712 (+)
AMCG00005433 NA coding upstream 8770 1573638 ~ 1578641 (+)
AMCG00005432 NA coding upstream 20207 1557840 ~ 1567204 (+)
AMCG00005435 NA coding upstream 80694 1496852 ~ 1506717 (+)
AMCG00005436 smg8 coding upstream 90846 1491471 ~ 1496565 (+)
AMCG00005442 NA coding downstream 874 1598525 ~ 1613076 (+)
AMCG00005441 NA coding downstream 70067 1667718 ~ 1671361 (+)
AMCG00005458 rfc2,LOC107669364,LOC107561059 coding downstream 94486 1692137 ~ 1697143 (+)
AMCG00005459 NA coding downstream 126358 1724009 ~ 1734069 (+)
AMCG00005457 NA coding downstream 143020 1740671 ~ 1745867 (+)
G152198 NA non-coding upstream 125472 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 128664 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 333452 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 530016 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 573031 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 657714 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1474299 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1586170 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1601681 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1662559 3260210 ~ 3260429 (+)
AMCG00005434 NA other upstream 69831 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 208109 1376468 ~ 1379302 (+)
G152159 NA other upstream 219455 1367014 ~ 1367956 (+)
G151969 NA other upstream 1050048 536751 ~ 537363 (+)
G151967 NA other upstream 1187546 398925 ~ 399865 (+)
G152267 NA other downstream 148309 1745960 ~ 1748934 (+)
G152337 NA other downstream 202160 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 331804 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 906259 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 1247566 2845217 ~ 2849608 (+)

Expression


Co-expression Network