AMCG00005444


Basic Information

Item Value
gene id AMCG00005444
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1579830 ~ 1584712 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005444
GCGACGCGTAATCTCGCGAGATTAGACGAGCGGACGGCGAGACCGCTGTGGTCGGAGAGGCGAgaggaggaaagagaaaaattCACATTGAACCAAGAAAGATGTCGGGCCGCTCGGTTCGGGCTGAGACCCGGAGTCGCGCCAAGGATGACATCAAGAAGGTGATGGCGGCCATCGAGAGGGTCCGCCGGTGggaGAAGAAGTGGGTGACGGTGGGAGACACCTCTCTGCGGATATTTAAGTGGGTGCCTGTAGTGGATACTAAGGAGaaGGAAAAGAGCAAGGCCAACGGCAGCGCAGGCAGGGAGCTGAAGGTCTTCCCTACGGACTCCTCCTCGGACAACAGCCGCTCTGTGCTGCTGGACTTCCAGGATGAGAACAGCAACCAGAGCTCCCTGTCGGACATGTACCAGCCCAAGGTGGACAGCAGCAGTAACTCCAGCCCCCAGCCCAGCGAGCCCGTCAGCCCGGCCCCCACCTCCGACTTCCGCACCGACGACTCGCAGCCGCCCACCCTGGGCCAGGAGAGCATGGAGGAGCCATCGATGCAGACCTGTGAAGTTGCAGACGAGCCGCCCACCCTGACGAAGGAGGACCTGCTGCCCCTGGGGTCTCAGGGAGAAGAGGAGAGCTCGGGGGACTCTGGAGATCTGGGCGAATCGGGAGCCCCGCCGCTGAAGAGAGTCTGCACGGAGCAAAACTCGGTCCTGCAGCCGGCCCCCCTGAGCTAGCCCACCCTGCGCTCGGCTCGGTCAGCGTGCGGCTCGGGTGG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005444 True 772 mRNA 0.63 6 1579830 1584712

Neighbor

gene id symbol gene type direction distance location
AMCG00005433 NA coding upstream 1189 1573638 ~ 1578641 (+)
AMCG00005432 NA coding upstream 12626 1557840 ~ 1567204 (+)
AMCG00005435 NA coding upstream 73113 1496852 ~ 1506717 (+)
AMCG00005436 smg8 coding upstream 83265 1491471 ~ 1496565 (+)
AMCG00005437 NA coding upstream 89208 1486213 ~ 1490622 (+)
AMCG00005443 NA coding downstream 2699 1587411 ~ 1597651 (+)
AMCG00005442 NA coding downstream 13813 1598525 ~ 1613076 (+)
AMCG00005441 NA coding downstream 83006 1667718 ~ 1671361 (+)
AMCG00005458 rfc2,LOC107669364,LOC107561059 coding downstream 107425 1692137 ~ 1697143 (+)
AMCG00005459 NA coding downstream 139297 1724009 ~ 1734069 (+)
G152198 NA non-coding upstream 117891 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 121083 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 325871 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 522435 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 565450 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 670653 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1487238 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1599109 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1614620 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1675498 3260210 ~ 3260429 (+)
AMCG00005434 NA other upstream 62250 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 200528 1376468 ~ 1379302 (+)
G152159 NA other upstream 211874 1367014 ~ 1367956 (+)
G151969 NA other upstream 1042467 536751 ~ 537363 (+)
G151967 NA other upstream 1179965 398925 ~ 399865 (+)
G152267 NA other downstream 161248 1745960 ~ 1748934 (+)
G152337 NA other downstream 215099 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 344743 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 919198 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 1260505 2845217 ~ 2849608 (+)

Expression


Co-expression Network