AMCG00005446


Basic Information

Item Value
gene id AMCG00005446
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1660027 ~ 1666365 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005446
ATTTGTATGAGTTTGGATGCTTTATAAAATCAGTGCTCCAATACAAACATAGTCCATTACACCTCTGAGTACACTTTGAGTACCGCAGTACAGACGCTACTCGGACTCGGCTGAACTCTCGGGAAGTCTCGTCTGGGTCGCCGCGATTGGGCCGCTCCCCCGCCGCGGCACGGAGGCTCATTGGGCGGGACGGCGGCGCTGAGGGCGGATCGGTACCGAGCCGAGCCACTTCCAATAACACgacaaacacgcacacatatcGGCCATTGttcatattaaaagcaaaaacacacgACCGAGTGAGCGCCCTCTCCGCAGTGGCACCATGTCGACCAACGGCCTGTCGCGACACGTCCAGCAGTTCCTGAACCCGGAGCCAGAGCGCCCGAGGCCGGCCGCAGCGCAGAGTCCGTACCAGCGCCTGGCCCGGCAGATGCAGGACCTGGTGGGAGACGGGGGCATCCTGAAGGAGGTGATCCAGCCGGGCATGGGCCAGCCGGTGCCGGAAAATGCCTCGGTCGTATATCATTTCTCTGCCTATCTGGAGTACTCGGACAGACCATTTGAATCCAACCGCTACCAGAAGTATCCGGGGCTGATGAAGCTGGGGAGAGATGTGACGCTGTGGGGCCTGGAGGTAGGCCTGCTGACCATGAGGAGGGGCGAGTTCTCCCGCTTCCTCTTCCTGCCCAGGTACGCCTACGGGCCCATGGGCTGCCCCCCGCTCATCCCGCCTGGCGCCACCGTGCTGTTCGAGGTGCAGCTCATCGACTTCCTGGACTCCGCCGAGGTGGACGATTTCTTCGCCCTCAGTCTGGAGCAGCAGAGTGGCGTCCCGTTGCCCACCGTGCTGAGCGTGGTCAACACACAGAGGAGCTTCGGCAACCGGCTGTTCCGACAGAGCCGCTACGAGGACGCCAAGGACCGCTACAAGCAGGCCATCGCCGTCCTCTCGAACCGTGAGCCGGCGGACGAGGAGGAGAAGAGCCAGATCTCGGCCCTCAAGCTGCCTGTCTTCCTCAACCTGTCGCTCACCATGATGCGCCTGCAGCGGCCGGCCAGGGCGCTGGTCTATGGCAGGCGGGCGCTGGACATCAGCCCGCATCACGCCAAGGCGCTGTTCCGCTGCGGACAGGCGAGTCTGCGTCGGCCGGGGATCGCCCCCTCGCCCTCTtgctccccctctcctctctcttctctcgcGCTCTCTTTTGCCCCCTCTCATCTGAATGagattaaactgtaaaataataaacaaaaaggaaacacCAGCCCATCGTAAAAGGCATCCCCAAACCTTCACCCTGCTCTCGTGCTCCGTGTCCCAGGCACACCTGGAGATGGGCGACTACGAGGAGGCGCGGGACTTCCTGGTCCAGGCGCAGGTGGAGAGACCCTTCGACACCGACATCAACGACCTGCTGAAGAAGCTGGCGagCTGCTACAAAGACTACACCGAGAAGGAGAAGCAGATGTGCGTCAAGATGTTCTCCAGCCTGCGCGCCGTGTCTGAGAAATAGAGGAGTCGGGGGCCGAGTGCACGGGGGGCCACGGAGCAGCGAGACTCTACAGGAGGAATCGTCCCCTCGGCTTCAATCAACGCAATACTTCTGTGATAAACTTATGTTTTGGAAAacactgaatatttaaaaagaattgtattatgtttctgtgtgtgtgcaaatctatatataatcaaatagTTATTGACGAAAAAGTAAGAAGGTTGTGAAGGGTCTAATTAAAGAGAATCTATGCTGTTGTGGGTGGGGCGGAGTTCTAATGTGAATCTCATCTATTTTCATATGAGAAACGACAAAAACAACTCTAATAATGACAGCCAAGTAGCTTTCGATAATCTCTCTCTGTACTGCTGATGACTGGatgtgtgtggtgggggtggaGAAACCAAGATAAagacgggagagagagaggagagcgaatagtggggtgggggggcgtttactttatttttatgacaAGATCGCCATTCCTAAGTTGAGCTTTATCCTCATTTGGCATCCAGTGTGTTTGACTTCCTAAATGATGTTGTATGGTTTCCTAATGTGTGTGGAGGTGTTGTGTAGTGTTGGTGTACTTCACACCTGTCCACAAAGCCTCTGTGATTCCTGGGGAGTCTGGTTCTGGTTCCGTATTGTGCTCGCAGGTCCGGATgcacaataaacacattcaatCGACTA

Function

GO: NA

KEGG:

id description
K09572 FKBP6; FK506-binding protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005446 True 2201 mRNA 0.56 8 1660027 1666365

Neighbor

gene id symbol gene type direction distance location
AMCG00005445 fzd9,LOC106567714,LOC106612580,LOC107713270,LOC107691950,LOC107709816 coding downstream 22531 1635745 ~ 1637496 (-)
AMCG00005438 NA coding downstream 85271 1570753 ~ 1574756 (-)
AMCG00005439 hip1,LOC102790400 coding downstream 123159 1523660 ~ 1536868 (-)
AMCG00005440 NA coding downstream 136742 1517483 ~ 1523285 (-)
AMCG00005426 NA coding downstream 174199 1480176 ~ 1485828 (-)
AMCG00005447 LOC106580668 coding upstream 8879 1675244 ~ 1685460 (-)
AMCG00005460 NA coding upstream 30912 1697277 ~ 1707786 (-)
AMCG00005462 NA coding upstream 88548 1754913 ~ 1774451 (-)
AMCG00005420 NA coding upstream 136552 1802917 ~ 1808080 (-)
AMCG00005421 lrrc75a,LOC107585608,LOC107664947,LOC108278186,LOC106935686,LOC107690424,LOC107744770 coding upstream 173202 1839567 ~ 1857205 (-)
G152197 NA non-coding downstream 201365 1458237 ~ 1458662 (-)
G152178 NA non-coding downstream 261635 1397341 ~ 1398392 (-)
G152085 NA non-coding downstream 589371 1065459 ~ 1070656 (-)
G152071 NA non-coding downstream 650288 998354 ~ 1009739 (-)
G151979 NA non-coding downstream 969085 690659 ~ 690942 (-)
G152320 NA non-coding upstream 26384 1692749 ~ 1693555 (-)
G152335 NA non-coding upstream 79588 1745953 ~ 1752738 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding upstream 274658 1941023 ~ 1946800 (-)
G152424 NA non-coding upstream 501239 2167604 ~ 2175954 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding upstream 628468 2294833 ~ 2318672 (-)
G152271 NA other downstream 44530 1521742 ~ 1615497 (-)
G152277 NA other downstream 152399 1505940 ~ 1507628 (-)
AMCG00005419 NA other downstream 283554 1371342 ~ 1376473 (-)
G152133 NA other downstream 324587 1219327 ~ 1335440 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other downstream 1539480 108398 ~ 120547 (-)
AMCG00005461 eif4h other upstream 42318 1708683 ~ 1723500 (-)
AMCG00005532 NA other upstream 530989 2197354 ~ 2329684 (-)
AMCG00005517 NA other upstream 740160 2406525 ~ 2410247 (-)
AMCG00005491 supt6h,LOC107603297 other upstream 1206141 2872506 ~ 2890448 (-)
G152645 NA other upstream 1405495 3071860 ~ 3090714 (-)

Expression


Co-expression Network