AMCG00005451


Basic Information

Item Value
gene id AMCG00005451
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 906828 ~ 925853 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005451
GACAGCGCTGCGCTGTGGCTGCCTGTGGGCTCAGCTGAGACAGAGACCCGTTTCCAATCCGGCGCGTTTCCCCCTCGGTTTCGCAGGGTTTCCTTAATCCTGTATGTAAATGACAGCCAATAGATGCTGTTGTTGCGCCGGGCTGGGATTAGCGGAGGCGAATGGGTTTCAATTTTACTGGATTACAGAACAAAGAAAGGGGAAAGGGGACACACTCCTCCgccaaagaaaagagaaagaaagggaaaaacagGGCAATAATCCACCGGAGGACAGTCCATAAAGCCCCGACGATTTCAAAATGCTTCGGATTACAGTGTTTTGGGCTCAGATGGCCGCTATATAGAGACAGGGGCACAAATCGAGCCGTTTCCATTGGATTAAACGGAGAAGAAGGCTGTGTTGCGGGATTGACAGCAGACGGCATTTAAAAGCGTCATTTCGGGATGGCACAGGTGCGGCGGGCGTGTGAGGCGGTCCGGGCGAGTCCCCGCGCAGAGCTTCGCATTCCCAGCGTGTCCACCAGGCAGGAGGTCCTCAGCAGCCTGGTGTCCGCGCTGGACTCTGTGTGCACTGCCCTGTCCAAGCTGAACGCGGAGGTGGCGTGCGTCACGGTGCACGAGGACAGTGTGATCGCCGTGGGCACGGAGAGGGGCCGGCTGTTCCTCAGCTCCAGGAAAGAAATACAGACGGACTTCCACAAGTTCTGCAGAGTGCCCTGTCTGGCAGCCTTACCCACTTCAAACGCCTCGGCCAAACCCCAGGACTCTGAGCCAAGCAAGCTGGGCAAGGACAGTGTGCCGGGGGCGGCCCGCACGTCTGCAGAGCCCCCGTCCAACATGTCTGTCCTCAGGAGGATGGTGGAGGAGGTCTTCAGTGTGCTTTACAGTGAGGCTCTGGGAAAGAGCAGCCTGGTGCCTGTGCCTTATGACTGGCTCCTGAAGGACCCCAGCTGCGTGGCTGTCCACGGCCTGCCTGACGGGGTGTCCCTGAGGAGGCCAGCTGACTATGACACCAAGACCTTAATGAAGATCCTGGAGCAGAGCAACCACATCCGCTTCACTGTCAAGCGGTCCATCGAAGAGGCCTCCAAGGATAAACCTTCACCAGATCTCAAGCACTCCGGGTCTGGCACCAACCACACTGCCGCCAAGTCCGCCAGCCAGGAGGGACCGGGGAGCAACAGCATGCTGTCCTCTTTCCTGTATGGCATCGCAGCGCCCCCGTCCGAGAGCACCCCCGACCTGCCTTCCAGCTCTCTGCTCAACCCCCACCTGGGCTCAGAGCTCCAGGGAGGCTGGGCAGCGCGAGGGGAGAAGGCGGCACCGGCCAAGGACTGTGCAGATAACGGTGACCGGTTAGGGGTGTCGGGGGAGCTGGGTCAGAGCTCCCAGAGTGTCCATATATCCAAGCGCCTCTTGTTCTCCATTGTGCATGAAAAAACAGATAAGTGGGATACGTTTATCCGTGAAACAGAAGACATCAACACGCTGCGGGAGTGCGTTCAGATCCTGTTCAACAGCCGCTACGCAGAGGCACTGGGTTTGGACCACATGGTTCCGGTTCCATACCGGAAGATTGCCTGTGACCCGGAGGCTGTGGAGATCATCGGCATCCCTGACAAAATCCCCTTCAAGCGGCCGTGCACCTACGGCGTCCCCAAGCTGAAGCGCATCCTGGAGGAGCGGCACGGTGTGCGCTTCGTGGTCAAACGAATGTTTGATGAAAGGATTTTTACAGCTGGAGGGAAGGTGTTCAAAGACGAAGGCAAGCAGGAGGCGGCGTCGCCATCCGAGGACAGCTACCCAGAAGCCCCCAGGACTGTGCCCTCCCTGGAGTTGCTCAGCACCTCCCACAGCAGCCGatCGACTAGTTCATGTGTGAGCCCTATAGGAGACTGTGAACCAGggCCATCAGCAGATTGTACCCCCTTGAAAAAGATTAAAACTGAACCCCCAGATGGAGAAATCATTCAAGTGACAGTTCCAGatgtcagtgtgtctgtggaggAGCCGGGCGAGTCTCCGGCCAACACTGTGGCGTCTGAGAGCCGCCGGCCGCAGGAGCCCCTCGCAGTTGAACCCGTTGCTCAGGAGTCCAGACCCACAGCAGCCAAGCGGTCGGTCGAAGAGGATCTTGGAGAAATGATCCTTCGACTGCGGAAGCAGGTGGAAAGCCTGTTCAATACGAAGTACGGTGAGTCTCTCGGCCTGCCGCAGCCCTCCCGAGTGCCCTACTCCAAGTTCCAGATGTACCCGGAGGACCTGTACGTCACTGGACTCCCTGACGGCATGGCTTTCCGCCGGCCCAACTGCTTTGGAGCAGCCAAACTGCGCAAGATCCTGTCAGCCAGCAGCCACATCCGCTTTGTCATCAAGAGACCGGAGCTGCTAACTGAGGTGCTGAAACAGGAGCCACCCCCCCATCCACCCAGCAACCCAGACAGTTTAGAAGCCAAACTGTCCAGAATTGATCTGGCCAACACGCTGAGAGAACAGGTCCAGGACCTCTTCAACAGGAAATACGGTGAGGCCCTGGGCATTAAGTACCCTGTGCAGGTGCCCTACAAGCGCATCAAGAGCAACCCCGGCTCTGTGATCATCGAGGGGCTGCCCCCTGGAATCCCCTTCAGGAAACCCTGTACCTTCGGCTCTCAGAACCTGGAGAGGATCCTGGCCGTCGCAGACAAGATCCGCTTCACGATCACCAGACGGATCACCTTGCTGAAAAAGGCCTACGCCTCCATAAGTGAGGATGAAGAAGTAAACCGCATGGGAGAGAAGGTGATTCTGCGGGAGCAGGTGAAGGAGCTCTTCAACAAGAAATACGGCGAGGCCCTGGGTTTGGATCGGTCAGTTCTTGTGCCCTACAAGCTGATCCGGGGCAGTCCAGACTCTGTGGAAGTGTCCGGGCTCCCTGACAACATCCCGTTCCGCAACCCCAACACCTACGACATCGGCCGGCTGGAGAAGATCCTGCACGCACGGGAGCAGATCAGCATCACCGTCAAGACGCAGCTGCAGCCTTTTGCAGAGATTTGCACCCAAGCTTGCAACACAGTGAAAGAAGGCTCCACCCATCGACGCAAGCGCAAAAGAGTCCCTGACAGCAGCAGCGTCTCCGCCCTGACGGGGGGGGAGTCGGGgacagcagccaatcacattcCTGTGATGCAATGGCCCATGTATATGGTGGACTACAGTGGGGTGAACATGCAGGTTCCTGGACAAGTCAAATACGAACAGCCTGGCCCACAGCTCCCACTTTAATGATAGGACAGTACAGAAGAGGGAGGGTGTGCATTGCAAACCAATATTTATGAATGCAGAGTCATCGTCGCTGGTTTCTCAAGGGCGCTGCTGCCAACAAACCAGTCAATTGGAGGAATGGAAACGGTGGTTTGAGGCCATCTGTGTGCAGTGCCTCGTGGGGAAGAAGAGAAGACGGCAGACCGCCAGCCTGAGCTGCAAAGATCTCAACGGTGTTAAATCAAACGCCGGGACAGCAGGGATGGTGTGTGTTGGGCCGAGTTCATGACAATTTTCTGGATGGGGTTTCCTGTACTGTGTTACTGTCTGCTATCACTGTTGCAGCACATACTTGTAAACAGAAAGACCATCCACTAGACACATCAACCCAGATATAGACTTCACACTCAAAGGATAACTTTCCTCTCATGGTTTTtgcatatgaaattaaaacaataaatgcaataccatataatataatgaatacaCTCCTAGTTACATCAGTATAGTTCCGTACCATTTGCAACATCCTTCTGTCAAAATGTGTGGCTTCAGCAAAATACGTTTACGATGAAAAGAGGAAATTCTGCACAGGAGCAAATGGCTTGATAGCAATCCCTTTGCAGTTGAACTTCAAGAAAATGCTCTGCTCCTTTACAGCAGGACGTTCTCCACAACCAAAAGAAACTTGTCATGCTGAATgtgtccatgtatttattaatatattttgaatatattgttttacaacTGTTTTGAGGGTAACAGAAACACTAGCTTTAGTATGATCACTAACTGTCTGAAAAGCGTGTTCACTTTAAGTCCTGATTCTAGACAGAGCAGATGGAAAAAGCAAACCGCGGAGTGTAGAGCGAAGCTTGTATAGATGCTGTTCCAAGAATAACGACAGACTCCCTGAATCACCAAATAGTTAACAAGTCAAGACCATGTTGTTCTTGCATATCAACCATCACAATCCCAGATGGACAAAGGAATGCAGACGTACCCTGCGTAAGATGCCGGCGGTGCGCATGCAACAAGCGGAGAGAGATTCCTCACCATTCCTCCTGCTGATCCTTTTTTACGGAATGGGTTACGACAATAAAACAAGTATAAGCTGTTATGAATGTAATTCATGTAAAGAAAGGAAATGGTGTCTGCTATCCTGTAATGACTGTCTGTCAGGATTAACCAGGATTTCTATGCTGTACTAAATGCCATTTAGgcctttgaaataaaatgtgttgccttgcattttt

Function

GO: NA

KEGG:

id description
K03121 TFII-I, GTF2I; transcription initiation factor TFII-I

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005451 True 4504 mRNA 0.53 26 906828 925853

Neighbor

gene id symbol gene type direction distance location
AMCG00005448 NA coding upstream 2208 878967 ~ 904620 (+)
AMCG00005393 NA coding upstream 648026 257084 ~ 258802 (+)
AMCG00005392 NA coding upstream 649782 255058 ~ 257046 (+)
AMCG00005402 NA coding upstream 815301 90255 ~ 91527 (+)
AMCG00005403 NA coding upstream 825559 76221 ~ 81269 (+)
AMCG00005452 NA coding downstream 345 926198 ~ 933420 (+)
AMCG00005449 LOC107103649 coding downstream 9881 935734 ~ 947232 (+)
AMCG00005453 NA coding downstream 27377 953230 ~ 956421 (+)
AMCG00005450 NA coding downstream 32147 958000 ~ 962580 (+)
AMCG00005468 ap2b1,LOC103360248 coding downstream 47777 973630 ~ 984375 (+)
G151978 NA non-coding upstream 215892 690659 ~ 690936 (+)
G151968 NA non-coding upstream 370136 535895 ~ 536692 (+)
G151964 NA non-coding upstream 546536 360093 ~ 360292 (+)
G151963 LOC107691770,LOC107571976,LOC107709746 non-coding upstream 550968 355581 ~ 355860 (+)
G151941 NA non-coding upstream 658709 175252 ~ 248119 (+)
G152040 NA non-coding downstream 88225 1014078 ~ 1014380 (+)
G152053 NA non-coding downstream 131332 1057185 ~ 1057395 (+)
G152111 NA non-coding downstream 319178 1245031 ~ 1253959 (+)
G152196 NA non-coding downstream 532301 1458154 ~ 1458747 (+)
G152198 NA non-coding downstream 535871 1461724 ~ 1461939 (+)
G151969 NA other upstream 369465 536751 ~ 537363 (+)
G151967 NA other upstream 506963 398925 ~ 399865 (+)
G152159 NA other downstream 441161 1367014 ~ 1367956 (+)
AMCG00005418 NA other downstream 450615 1376468 ~ 1379302 (+)
AMCG00005434 NA other downstream 583649 1509502 ~ 1517580 (+)
G152267 NA other downstream 820107 1745960 ~ 1748934 (+)
G152337 NA other downstream 873958 1799811 ~ 1803903 (+)

Expression


Co-expression Network