AMCG00005452


Basic Information

Item Value
gene id AMCG00005452
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 926198 ~ 933420 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005452
CCCGCGTCCCGCAGCAGTGAGTCGTGCGGGTCACAGGCAGGAGGCGGCGGCGCTGCGTGGAGACACAGACCCCTCGGTCTGCGCTGCGACGGAGACGTTTCTTTCAGGTCGGACAGCCAATGGCTGTTTAAATGCATAAGCGGGTCCCGTCCACAGCCCGGCGCCGCACGACCACCGCAAACAACGCAAAGTAAGTGAAAGAGCCGGGCAGCGGCTCTGCAGTGTCTGTGCTCGCCTCGGCTCATCTGCGCCGCAGCACACTCGTCACAACTTCATCTTTCCGGGGATGATGCAAATGACAATCACAGAATCATCGACAGCCCGATCCGCCGCGGTACCGAGCTCAGCACCGGGGCTGTCGCTGACGGGCAGGGCAGGTGCACGgctctgtttttgtgtctttacTCTGTGACGTTGCTTTTCAGTGTCCATTTCTGCAGTAGACAGTATCCGCTCCATGCCAACCCAGGCGTGACGCATCAGCTGCCGTGCGTGGCCGTGGGAGCCGGACCGGCGCTTTCACTGCGACGGTTGTGTGGACGCTGTGGCCGGTGAAGGGATGTGTCTGGCGGCTGCAGTGAGGCCGCAGCTCTGAGCAGCTCTGAGCATCCGGGCCGCCGGTCCACACGAAAGGGCCGTGTGTGGAAAACACTGACACTTCAGTCTCCTGAAGGACCAGCCCGAACCCTATAGTTAGCACTGGTCTGTCCCCATCTCCCCCTGTAGTGTGCCAGACACAAACTTCTCAACTTCGTGTATATTTAGGgtcaggatatatatatatatataatgtgttgttttttgctgtaaaaatgtgaatatgtaATGTTTCCATCATTCTCCATTGAGAACAGATGAGTTGTGCACAGCGAGGCACAGTGACGGCAGGGTGACACTGCAGCGGTGGGCTGGTCTGGGGTCCAACCTGCAGTCTGTGGGTTTCTGTTCGTGCCAGTCGTGATTAATATGGCAGCTCATCCTGGCTGCAGCTGCGACCGTCCCCCACCGCTCCGGTTATCCAGAACTCATCCGCTCGTCTGGTGGTTTTCATTCGATCACTCGGGTCACATCTGTTCACATGGTACCTGTAGCACAACAGCTGGTTCTCCTGAGCTGCGCAGCTCTCCTGCTCTTACGCACTTTATTTAACTCTGCGTCCTTGTGCTGCGGTGTACccatttctttctcttctcacCCTAGTTCCATGGCACAGGCCGCAGACTTGGCAGCAGGAGCCCCAGAGGACGAGGCCTTGGACAGCCACGCAGCGGTGACCTTCCTCATGTCTGCTCTGGAGTCCATGTGTAAAGAGCTGGCCAAGTCCAGGGCAGAGGTGGCCTGCGTCGCTGTCTGTAACAATGAGGTGTTCGTGGTGGGGACAGAGCGCGGCCGGGCCTTCGCCAGCTCCCGGCTGGACTTCCAGAGGGACTTCATCAGCTACTGTATATCAGAGGAAGAGAACGTCAGAGTGCAGAAGCATCAGCGCCGCGGTGTTAAACCTGGACGTGAGGAGGGTTCGGACAGAGAGACCCTGAGGAAGGCGGTGGAGGACCTGTTCTGTATATGTTATGGGAAGGCCCTGGGGAAGTCCAGTCTGGTTCCTGTGCCGTATGAACAGATCCAGAGCGACCCCTCTGCAGTGGCAGTCAAGGGGCTCCCGGACGGGCTCTGCTTCAAGGAGCCGGCGTGCTACGATACCCTGACGCTCAGACACATCCTGGGCAGGAAGTCTCAGATAGCCTTTGTCGTTAAAAGACCTTTTAAAGAGCAAAAGAAGAAGATGGGAGAGCAGGTCAGTAAGGCGGCTGAGAACGGATCGCCGGACAGCTTCGTAGCGGTGCAGGTGAAGGCAGAGCCCAGTGAGGACAGAGACGATCTGGAAATGACCACAGTAACGGTGAAGGAGGAGTTGGTGGATCCTGAATACACGCTCTACCCCCTGATAGGCAACTGCCTCGGTGAGGAGTTCGGTGAGGATGAGGAGCGAGAGTCGGTGGTGACGGGGTCGACTCCACAGGCCGCGTCCGAAGCCAGCGACGACCCCGAGGTCGAGGTGACCATCGAAGCCTCAGCCAACTGCTGGCTGCCCGCCGGGATCGATCTCGCCCTCGGACGCCCTCGGGCCGATGCCCCCCAGCCCTTCAACAGCAAGAACACGCAGTGCAGCACCAAGTGGGGCATGACGGTGCTGCGCAAGTGGTACCAGGGCCACTTCAAGCGCTCGGCCTCCAGCATTGACGCCATGTCCGCCTCGGAGCTGGACAAGGTCCTGCAGCAGTTCTACATCAACGCCAAGACCAGCAAGAAGGACAAGTACACCAAGAACTCGCTCAACGCCATCCGCAAGAGCATCAACCGCTACCTGCGCGGCCCCCCGCTGCGCCGCGACATCAACATCTTGTGCGACTCGGAGTTCCCCGCCTCCAACCGCACCTACCGCGAGGTGTGCCGCACCCTGAAGATGGAGGGCAAGGCCTCCACCAAACACACGGCCCCCATGGCAGTGGAGGACCTGCTGAAGCTCTACCAGAGCCACGTGCTGAAGCCCAGCTCCCCCCAGACCCTGCTGAACAAGGTGTGGTTCGACATTATGTTCTTCTTCGGCCGGCACGGTGGCGGGGGCCGTTACACCCAGCGCGAGTTCACCAGGGAGTCCTTCGGCTTCGGGATCGACGAGTACGgGAGGGAGTTTGTGTACGCTGTGAAGGACGAGCGGGCCGATGCGGAGCACCAGACCCACCACAGGGTGCGGATGTACGCCCTGCCCGGAGACCCCCACTGTCCCGTCGCTGCTTTCCAGCTCTACCTGTCCAAACTGAACCCCTTTAGCAACGCACTGTTCCAGCACCCCATCCTGCACCCCTCCACGGACATCTGGTACAACACGAAGCCTGTGGGAGTCAATGTGCTGGgcAGCATGATGCCCAGGCTGTCTAAGGAAGCCCAACTGTCTGCCATCTATTCCAACCACAGCATCCGAATGACGCCGGTGGTCCTGCTGCAGGGCCTGCTGCAGACGCACCGCTCTGAGGGACACGCTGCTCCTCCACGCGCCGATTATATAAAACCCCAGACCCAGTCTTACGACACTCTGGCGACGCTCTCTCGCAGTGCGCGCTGTGCAGCGACACAGCCGGACACAGAGACGGAGACGGACTCGGGCAGCTGGCTGTCTGTGGGCATCACATATCATGACCCCGATGTCAGAGGGGAGTGGGATTTAAACGGCCTGACCCCCGAGCCCGGTTGCCCTCAGAACAGTCTGTGCTCAGTGGACTGTGGCGCCGCGTCGCCTGAGCTGCTCCTGCCACACGGGGCCGGACCCTGGGGCTGGATTGGCACACCTCTAGTGCGGCCCTCTTCTTACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005452 True 3370 mRNA 0.60 16 926198 933420

Neighbor

gene id symbol gene type direction distance location
AMCG00005451 NA coding upstream 345 906828 ~ 925853 (+)
AMCG00005448 NA coding upstream 21578 878967 ~ 904620 (+)
AMCG00005393 NA coding upstream 667396 257084 ~ 258802 (+)
AMCG00005392 NA coding upstream 669152 255058 ~ 257046 (+)
AMCG00005402 NA coding upstream 834671 90255 ~ 91527 (+)
AMCG00005449 LOC107103649 coding downstream 2314 935734 ~ 947232 (+)
AMCG00005453 NA coding downstream 19810 953230 ~ 956421 (+)
AMCG00005450 NA coding downstream 24580 958000 ~ 962580 (+)
AMCG00005468 ap2b1,LOC103360248 coding downstream 40210 973630 ~ 984375 (+)
AMCG00005472 NA coding downstream 51270 984690 ~ 984959 (+)
G151978 NA non-coding upstream 235262 690659 ~ 690936 (+)
G151968 NA non-coding upstream 389506 535895 ~ 536692 (+)
G151964 NA non-coding upstream 565906 360093 ~ 360292 (+)
G151963 LOC107691770,LOC107571976,LOC107709746 non-coding upstream 570338 355581 ~ 355860 (+)
G151941 NA non-coding upstream 678079 175252 ~ 248119 (+)
G152040 NA non-coding downstream 80658 1014078 ~ 1014380 (+)
G152053 NA non-coding downstream 123765 1057185 ~ 1057395 (+)
G152111 NA non-coding downstream 311611 1245031 ~ 1253959 (+)
G152196 NA non-coding downstream 524734 1458154 ~ 1458747 (+)
G152198 NA non-coding downstream 528304 1461724 ~ 1461939 (+)
G151969 NA other upstream 388835 536751 ~ 537363 (+)
G151967 NA other upstream 526333 398925 ~ 399865 (+)
G152159 NA other downstream 433594 1367014 ~ 1367956 (+)
AMCG00005418 NA other downstream 443048 1376468 ~ 1379302 (+)
AMCG00005434 NA other downstream 576082 1509502 ~ 1517580 (+)
G152267 NA other downstream 812540 1745960 ~ 1748934 (+)
G152337 NA other downstream 866391 1799811 ~ 1803903 (+)

Expression


Co-expression Network