AMCG00005457


Basic Information

Item Value
gene id AMCG00005457
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1740671 ~ 1745867 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005457
ATGCGCTATTTGTACCGGAGCCCGTCCGCTCCTCCGGCAGGTGGCGCTGTGTGCAGATGCGACGCTCAGGCGGCGGCGCCGGCCCTCTTTACGGCGCAGGAAGCGGCGCTGCACGGCGAGGGTCCGGGTTATGATGCCGATGCCCTGAAACCATGGATGAGTTGTGAGAAAACCGCAGTTCTGCACGGGGGCTTCCTCCTGGCTGAGAAGCAGTACCGCCCCAAGGAGCTGTCTGCCTTGAAGAAGTGTGAGTGGGAATCTATTGGGAGACCTGTCCTCCAGGCTGTGCAGGAAATAGTCTCTGGCAAGAGCAACTTGAACCAGATGACTGTAGATGCCTCACTGTGGGAGAGAAAGATCATTTGTATATTATGGACTAAGCTGCTGGAAATAGAGCACAGAAAagatgaggaggaggtggaCAAGAGTTGGAGAGATGATCCATCGTTCTCTGTGCAAAACATCCTCCCGAACATTAATCACACTATACTGTATGAGCTGGTGAAGACCATGGGCTATTCTCGGCTCTTTGTGGAGTTCCTCATGTCATTCCCTGCAGGAGCTCTCTGTGCAGAACTGGCCAGGTTGGTGGACCACGTTCTCCAGGAAACCTCAGAGGCAGATGTTCAGTTCTTCCTGGACATCTGGTGGGAGCTGTGGAAatggagaaaaagcacagaccAAGATGAGCTGGTCCAGATCTTCGCTGCTCAGGTGGCCAGGTACGCTTCCGGGTCCTCTGAGATTTCGTCCCAGGCCTCTAAGAGATTCAAACTCGACCCCGATGTGTCTGTCCCTTCGTGTGTGGTCTCCTTGCTCCTCGATGCGTTGAGCAAAATGAAAGACTGTGTTTCCTCCTCCCATCTCTGCTGCTTGGCTTTCTCCAACTGCTTGGACACAGTGTACACAACGTTTCTGTTCGACAGTACGCACACTCTCTCCACTGAGGCCTATCTTCAGTGCCTCTCAAGGGTGGTGCAGCTGAGAGGACCCTGCCAAGTTGAGCTGGACCGCAGTAGAGCAAAGGAGGACCAGGTTGAGACGATCAAGGAGGCACAACGAGAAGTAGTGGCAGCTCACAGCCCCTCTTTCTTCAAGCCAGAAGGGATAACCCTGATACAGAGCGTGAAAGCTTTGTTAGAACTTTTTCAGACTTGGAGAGAATTGCTCAAGATCTCTGATGCTAATGTCCATGGTTATGCTGCTCACAGACTGAAAGGTTGCCTAGCTCATGCGATGAATGTCTTGGAAGGGCTCCTGAAGTCCGAGACACTGAGCAAAGATGAAAGCCAGCTTGTGAGGGAATTCACTCAGGCACTGACCGCCTTGCTGGAGGGAATTTCTCTACCCGATCTGAACTGCGATTCTGCCGCAGTGGTGAAAGTAGCGACAACGATTATCGACAAGCGCTTGGAAAAGTTTGGAGAGGTGAGCCACGTGTTTGCCTCCAAGGTGAGCTGGGTCTCGGATGGCAATGACTGGATTGGCTGCCTGGAGAGGAACCAAGATGTCTTTAGGGACAACGATCTGGTCTTAAAGTTGGTTTCAACGCTGATTGCAAAGTGCCTGTCAGATACGGGGGCAAAAGAAGCGGTGAGGTGGATGAAGCTGAAGGGCATCATTTTGGACATTTTCACTGAGCTTCCGCTGCTCCACAAGAACACAGTCCTGGCAGGGCTGCTCTCCACGTGTGGAGGAAAAGGACTGTGTGGCGTGTTGCCAGAAACTGTCACTGGGGGTTTCGGGGAAGAACTGAACCTGGCCTTCAACTGCATCACTCAAAGCCAAGCACAGCAGAAGCTTGACGGAGCGGTGTCTGCTATTGCCCGGGTGGCCCTCCAGAACCCAGAAGCAGTCTTGCGGAGGGCGTGCCACCTTGCTGTATTCAACCTGGGCGCCCATAAACTGCTAGCCCAGATCCTGAAACACCTGCCAGGACTGATCCACTGGGAGGCCTCCAGCttagagggcagcagcagttcTGGGTGCAGTTTACTGTGCAGCTGCTTGAAGGGCACCGTGTGGGGCAAGCTGTCCTCAGCCAGAGAGGAGAACCAATTCTTGGAATTCCTTGTGTCCCTGATGGGGCCAAGCCAGGCTGCTGGGGACAGTCTAGAGAGTGGGCCGCAGCTTTTGCAACCCACCGAGGTCACCAGAGCCTTTGTTTTACCCCATGTAATGGATAGTGCATGCAGCGTGGAGCTCTGTCTTCGAATCCTCCAAACGTCTCTCCAGCAGAAAGCGCCGGAGGGCTCTGACCCTTGGGTGATGACCTGCTCTCCTTTtcctcttctgttctctctgtgCCAGCTCTTGGACAGCTGTTCTCAATGTTGGCAGGAGCCTACGGACAACATCCTTGCAGTCTCACTGGAAACTAAAGATCTCCTGACGGACATCCTGGCGGGACTGGGAGAGGTGGTGGGCAGGGAAGTGAGTGCTGACCCCAACACCTGGTCCAGGGCTCTCTTCTGGCTCTACAACAAAGTGGAGGCTCTGGACTGGACCGTGCGCTTCAGGCTGAAGGGGGTGTGGggcaatcattttaaaaatgaggtGCCCCTGTCCATGTTCACCGTGTGTGACCTGCCCGAAGACGACTGGGCCGCTCTGGCCTTGCCCACATACGGCCCGGGGACAGGGCTTCTGGCCTGGATGGAGTGCTGCTGCTTGTCCGCAGACACTCAAGAGCTCATGCTGGACATCTTGGTGGTCAATGTGAGCAATGCGGAGGAAGTCAACATGTTCAGCAAGGGCTTCATGGTGGCTCTAATCCAGATCCTACCGTGGTGCACAGCGGCCGAGTGGCGGCGGCTGGTGGTTGTGGCTGAGCAGCTCCTCCAACGGGGCATCCTCCACGTGCCGTACTCCCTGGAGTACATAGAGTTCATGCCCTTGCTCAACCTGCGACCTTTCACCTGCGACCTCCAGCTGTCCATGCTGCTTCTCAGGGCCTTCCAGCTGCTGTGTAGCTCCAGCTGCTCTCACTGGTTGCCGCAGATGGGCTGGTTGCACGTGGGGCGGCTGTACGCCAGCGCCGTGAGGGGCATCGTGGAGTCGCTGAAAGGGAAGGTCCCCTCCCCCGCCTCGTCTCCCCCGAAAGTCCCAGCCAGCGGATACGCAGACCGCAGCCAGGAGGCGGTGTTCGTGCTGCTGCAGCTCTTCTGTCACCTGCTGCACGTGCTGGTGATGATGCCCGCCGACACCTACGAGTCACTCTACCTGGCCTCCCTGGAGATCCTCGCGCAGTACGAGGCCGTGTTAAGGGACCACCCCACATCCGCCAGCTCTCTCGACAGGAGCAACTCCAAGCACTTCCTCAACTCCATTGCTCAGAACCTGCCCAGTGAGGAGCTGCGATGCACTGTCCAGCAGAAGATCTCTAtgctataattttttttttttgtacctcATCTGATCTGGATTGTTTTTAGGTCAGTGAAagatgaatttatttttttgttccttttctaaataaaataagtttgaatTCATAACCAATGCTGAACTGTCAGTGGTATCCATATAGTGTAAGCCTGTGTATGTAGGTGTAATTAGTGTAGAAGTGCTGTTTGCATTTGTAACAAGTGTAGAGAGCAGTTCACAGAAAACTGGGCAGCCTGTACGTCGAGTCTGTTATATCAGCCACTTAACACTGAAATGTTAATCAAATCTGATGCTCAACTGAAC

Function

GO: NA

KEGG:

id description
K13132 GEMIN4; gem associated protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005457 True 3690 mRNA 0.54 3 1740671 1745867

Neighbor

gene id symbol gene type direction distance location
AMCG00005459 NA coding upstream 6602 1724009 ~ 1734069 (+)
AMCG00005458 rfc2,LOC107669364,LOC107561059 coding upstream 43528 1692137 ~ 1697143 (+)
AMCG00005441 NA coding upstream 69310 1667718 ~ 1671361 (+)
AMCG00005442 NA coding upstream 127595 1598525 ~ 1613076 (+)
AMCG00005443 NA coding upstream 143020 1587411 ~ 1597651 (+)
AMCG00005430 NA coding downstream 152010 1897877 ~ 1908710 (+)
AMCG00005487 NA coding downstream 270149 2016016 ~ 2043288 (+)
AMCG00005486 NA coding downstream 303181 2049048 ~ 2055591 (+)
AMCG00005456 NA coding downstream 337367 2083234 ~ 2089877 (+)
AMCG00005455 LOC106612657 coding downstream 353177 2099044 ~ 2120874 (+)
G152198 NA non-coding upstream 278732 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 281924 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 486712 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 683276 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 726291 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 509498 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1326083 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1437954 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1453465 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1514343 3260210 ~ 3260429 (+)
AMCG00005434 NA other upstream 223091 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 361369 1376468 ~ 1379302 (+)
G152159 NA other upstream 372715 1367014 ~ 1367956 (+)
G151969 NA other upstream 1203308 536751 ~ 537363 (+)
G151967 NA other upstream 1340806 398925 ~ 399865 (+)
G152267 NA other downstream 93 1745960 ~ 1748934 (+)
G152337 NA other downstream 53944 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 183588 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 758043 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 1099350 2845217 ~ 2849608 (+)

Expression


Co-expression Network