AMCG00005458 (rfc2,LOC107669364,LOC107561059)


Basic Information

Item Value
gene id AMCG00005458
gene name rfc2,LOC107669364,LOC107561059
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1692137 ~ 1697143 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005458
TGGAAGTTACACGCCTGCGTTTCAGTGAAGACATTGACAAGATGAAGACCATTAATCAATACACTTATTGTTATGATTGTGTTTAACTGTATACCGCCATATAAAGGATATAACATCAAACGTTAAGCACCAAATAGGACTGATCACAGGTAAGTCAGAATTTCAACAGTGAGACCCGCCCCCTGCGTCTGACGTCACCGCGCCGCACGCTGTCTGGGTCCTGGCCGTGGCGGGAAGATCCGAGCGGACTGCAGTTTcggggggagagagaagcagagactGTTGTGGAAATACGGCACCATGGAGGTGGAGATGAAAACAGACGACACCGAGCAGGTCCGAACGGGAGAGACCCAGGCCAAGCCGGAGCCGGCGACTGGAAAGGGCTCTAGCCCGGGCTACGACCTGCCCTGGGTGGAGAAGTACAGACCCCTGAAACTGTGCGACATTGTGGGGAACGAGGAGACGGTGAGCAGGCTGGAGGTGTTCGCGAGAGAAGGCAACGTACCCAACATCATCATTGCGGGCCCCCCTGGGACAGGGAAGACCACCAGCATCCTGTGCCTGGCCCGGGCGTTGCTGGGCCCTGCCATGAAGGACGCCGTGCTGGAGCTCAACGCCTCCAACGACCGAGGTATCGATGTGGTGAGAAACAAGATCAAAATGTTCGCCCAGCAGAAGGTGACGCTGCCCAAGGGCCGGCACAAGATCATCATCCTGGATGAGGCGGACAGTATGACGGACGGGGCGCAGCAGGCCCTGAGGAGGACCATGGAGATCTACTCCAAGACCACCCGCTTCGCCCTGGCCTGCAACGCCTCGGACAAGATCATCGagcCGATCCAGTCCCGCTGCGCCGTGCTGCGCTACACCAAGCTGCGGGACGACCAGATCATGGCGCGGCTGCTGGAGGTGGTGGAGATGGAGGCGGTGCCCACCACTGACGACGGGCTGGAGGCCATCATCTTCACCGCGCAGGGGGACATGAGACAGGCTCTGAACAACCTGCAGTCCACGAACGCAGGGTTTGGGTTCGTCAACAGCGACAACGTTTTCAAGGTGTGTGATGAGCCACACCCCCTGCTGGTGAAGTCCATGATCGAGCACTGCGTCAGCGCCGACATCGACAAAGCCTACGAGATCATCGAGCAGCTGTGGAGTCTGGGCTACTCCCCCGAGGACATCATCGGGAACATCTTCAGAGTCTGCAAAACCTTCCCGATGCCCGAGTACgagattgGCTACACCCACATGAAGGTGGCAGAGGGGGTCAACTCCTTGCTGCAGCTGGCAGGACTCCTGGGCCGACTGTGTGCCAAGACCGCCGCCCCCGACGCCAGCTGAGCCCCGTCGCCCCCGGAGCGGGAGCTGCCCTCACGGTGGTTTCTTTGAGTCCCTCTCTTTCTGGATTCAGTGTTCAGCGCCTCCCATTGTCTACCCGCTTGACCACCATTAAAAAGCTCCACTCCAGCAGTTTGTAGTGTAAAGAAGTTTACCGTTGTAATACAGAGCTCAGCTAGAACACAAACCTGCCGCTGTGAGGGGCACACTGGCGCCCGCGATGACACCCCGGCAGTTCGGGCCTCTCCCGGACCGCCGCCTCGCTATAGGGATGTTTCTCTGACGCCGTGCCCGGCCGGTGCACTTGGGTGTGTTTCAGACGCTTCAGACAGGCCCGGCCCATTCCCAGTGCCGCTCTTATGCTGTAAATAGTCTGTGGATTGATTATGTACCATCGTCtggtatttgtttgtattaaagaaaaa

Function

symbol description
rfc2 Predicted to enable ATP binding activity and DNA binding activity. Predicted to contribute to DNA clamp loader activity. Predicted to be involved in DNA repair and DNA-dependent DNA replication. Predicted to act upstream of or within DNA replication. Predicted to be part of DNA replication factor C complex. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; central nervous system; digestive system; eye; and immature eye. Orthologous to human RFC2 (replication factor C subunit 2).

NR:

description
replication factor C subunit 2

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10755 RFC2_4; replication factor C subunit 2/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005458 True 1766 mRNA 0.58 12 1692137 1697143

Neighbor

gene id symbol gene type direction distance location
AMCG00005441 NA coding upstream 20776 1667718 ~ 1671361 (+)
AMCG00005442 NA coding upstream 79061 1598525 ~ 1613076 (+)
AMCG00005443 NA coding upstream 94486 1587411 ~ 1597651 (+)
AMCG00005444 NA coding upstream 107425 1579830 ~ 1584712 (+)
AMCG00005433 NA coding upstream 113496 1573638 ~ 1578641 (+)
AMCG00005459 NA coding downstream 26866 1724009 ~ 1734069 (+)
AMCG00005457 NA coding downstream 43528 1740671 ~ 1745867 (+)
AMCG00005430 NA coding downstream 200734 1897877 ~ 1908710 (+)
AMCG00005487 NA coding downstream 318873 2016016 ~ 2043288 (+)
AMCG00005486 NA coding downstream 351905 2049048 ~ 2055591 (+)
G152198 NA non-coding upstream 230198 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 233390 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 438178 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 634742 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 677757 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 558222 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1374807 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1486678 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1502189 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1563067 3260210 ~ 3260429 (+)
AMCG00005434 NA other upstream 174557 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 312835 1376468 ~ 1379302 (+)
G152159 NA other upstream 324181 1367014 ~ 1367956 (+)
G151969 NA other upstream 1154774 536751 ~ 537363 (+)
G151967 NA other upstream 1292272 398925 ~ 399865 (+)
G152267 NA other downstream 48817 1745960 ~ 1748934 (+)
G152337 NA other downstream 102668 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 232312 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 806767 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 1148074 2845217 ~ 2849608 (+)

Expression


Co-expression Network