AMCG00005459


Basic Information

Item Value
gene id AMCG00005459
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1724009 ~ 1734069 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005459
CTCTCCGCACAGATCCTCCATCTCCCTGACCTCTACATGTGCGACGCGCGGTTTCCGGTTGACCCGGAAGAGGCGGGCTCTGTGAGGGTTGCTGACAGGCGGACGGCATGGCAGCGCCAGTACACGCCAGCATGGGGGAGACAGAGACCGAGCCGATCCGGCCCAAAGTTACCGACGCCAAAGGGATCCTTCAGCAGAACCGAGAGTTCCTCGACTTCTTCTGGGACATCGCCAAACCCGACCAGGAGACGCGTCTCAAAGCCATCGAAAACCTCATCCAGTATCTTAAAAACAGCGAGAAGCCCGATGAGCTGAAGTACACGCTGAAGAGGCTGGTGGACGGACTGTCGCACACCAGGGAGGCGGCGCGGCCGGGATTCAGTTTGGCTCTGGCCCAGGTGCTGCAGGTGTTTGAGGAGCTCCCTTTGCAGACAGCGTTGGAGCACATCAAGGAGAAACACGACTTGCAGAGGGTGAAGAAGAAACTCATCAGGAATGCCGCGTTTGGGAACTTCTTCGGCGTGTTGTCTCTGTCGCAGTCCGGACGCCTCTCCAAGGAGCCCAAGGTGGTGCTGGAGTGCGTGCAGCTGCTGCAGAGCCTGGCCCAGTATCGGGAGCACCTGAAGGACCTGCCCCGGAAGACCATGGTGGACATCTTGTCTGAGaCCCCGGAGGAGGTGTTCGAGGACGTGCTGCTGGGGGCGCTGCAGAGTGACCTGTCCTCGGCCTTCAGCACCCCGGAGCAGCTGCACCTCCTGCTGGTGGCCATCCAGAAGTTCCCCGGTGTGCTGAAACCAAAGAAGCTGAAGAAGCTGCTGGGCACAACCACCGTGGTGACCACCGACAACATCCCCAAGCTGATCGAGGTGTTGAAGATGGCAGCCAAGTCCGTGAAGAAGGACCAGTCGCTGCCGTCCGTGGGTCTGGACCTGCTGCAGGTGGCGCTGCGAGAGGACAACTTTGACCTGTTCTGGAGAGAAGCGGTGGTCAAGGGCTTGCTGCTGGACCAGTCGGGACCCTGCAGCTACATGTGTTACCGGCTGCTGGGAAGCGCGCTGCCCTTGCTGTCCCTGCAGCAGATCCGCTACGTCCTGTCCGGAGAGGTGATGCGACACTATGGGGAGCACGTGCTGACCGCTCAGCTCCCCGACCGCTTCAAATTCGCCCCAGAGATGCAGAACTACGTTGGCGCCTTCCTGCAGGCCTGCTCCGACCCGGACAAGCAGATGGCGGTGATGGTGGGCTTCTCCACGCTCACCAACCAGGGCTACCCTGTGGTGCCCAGCTTCTGGAAGGTGGTGGAGCACCTAACTGTGCCCGTGCTGCATAGCTACGTGGAGTGGCTCAAGGCCATGTTCACACACCCCCAGCTGGACTCCTGCCTGGACTTCAGCACCAAGCGGCAGCAGCAGAATCAGGAGACGGAGGACACTACCCAGCACCGCCTGTTCCGGCTGCGCAAGTGGATCGTGCCCCGCCTGTGCTCCATCGTGGAGAACGTCAGTGTGAAGAAGGAGGAGGACCTGGTAATGGACATTGCCAGGTTCATTTTCTTCCACGCGTTCTTCGACGCCAAGAAGTCCACCCCGGACATCCCCGAGACGGAGAGTGCCCTCACGCTGTCCATAGACGATCAGACGCGCAATGTCCTCTCCAACGCATTTTTCggCCTCCTCCAGCACCTCACCCGCCTGCCCGTGCTGGGAGACGCCCCCGACACATCCGCCCAGAAGCAGAGGCACGTCCTGGGCGTGACCGCGGATGGCACCCTGTGGATCTTCTGCCTGGTCCAGTACGCCGACGTGCTGCTGAGCCAGACCAAATACGTCCGGCACATGACCAGGAAGGCCAAGAAGACCGAGAGCACCGACACCTTCGTCTTCCAGCAGCTCTTCCTGCTCGTGGGCATCCAGCTGTTCAAGGCTCCAGAGGAGAGTGTGGAACTCATTCAGGACCTACACAACTGCCTGGAGAAAGCGCAGGAGAAGACGACGACCAAGAAGAAAAAGCCAGCTGGTGTCAAAGGAGACGAGGACGAGGAGCCGCAGTgggtggaggtggtggtggaCATCCTGCTGTCCCTCCTGTCCCAGCCCAGCCGCCTGATCAGACAGGTCTGCCGCACTGTGTTCACCGGGATCTGCCCCCAGGTCAACCAGAGAGCGCTGAAGGCCATCCTGGATgTTCTGGACCCAGAGAAGGACGAGGAAGAGAGCGCGGTGGTCGTGACGGATGACAAGGATTCTGCAAAGAAAAGCAGGAAAGACAGGAAGACTGGAGAGGAGGACGACGACGAGGAGGATGAGgaggaagaggaaagtGACTCTTCGGAGGACGACTCCGTTGAAGAGGGagaagatgaggaggaggaggaagaagaggaggaggagccgaATGTAGACGAGAACTTCCGAATGGAGCTGATGAAAGTCCTGCAGGGccagaacgcactgGCCACAGAGGGGGACGAGAGCGAGGACGACGACGTGGACGACGAGACCATGATGAAGCTGGACGACAGCATCTCGGCGCTGTTCTCTGAGCAGAAGAAGAGGATCCAAGCCAAGAAGGACGAGAAGGAGAAGTTGCGCAAGGAGAAGGCCCTTGTGCGGGACTTCAAGATCAAGGTGCTGGACCTGGTGGAGGTGTTCCTGAACAAGCAACCCGACAGCCCACTGGTGTTCGGCATCGTGGAGCCCCTGCTGGGCATCATCGAGGGCCGCATGAGCTCCGAGGCCAACCAGCAGGAGCAGGACTTCCTCCGCAAAACGGCCGACATCTTCAGGAACCAGCTGTGCAAAGCCAAGCGCTACTGCAAGAGCGTGGAGGGCATGCAGGCCGAGCTGCATGACATGCTGGAGCGCCTGCTGACCAGGGCCCAGAGGCAGCCCGACTCCTCCGTCTCGCTCTACTACTTCAGTGCGGCGCTGTACCTGGTCCGAGTCCTGAAGGGAAACTTGTCCTCCTCTCCGGACCCGGCTGCTGGGAAGTCCAAGGCAGCAGCCAAGCCAGACGCCCCGGCCGCTGAGCAGGCTCTGGCCCCGGGGCTCCTGGACGTGGAGAGGGTGGCGGCGCTGTTCCAGGCGGCCCTTGCTGCCTTCATGACCAAGAGGAAGTCCTCGCTGTCGGGCGCCTTGTTCCTCGACCTCTTCAGCAGATTCCCTATTCTGAGTGTCCGGCTGCTGGACGGTGCGGTGAAGCACATGATGGATGGAGTGAGGTCGCATCAGCAGGGCCAGGCCTGCGCTCTGGTGCTCCGAGCGATGCAGACCCGAGAGGTACGCCAATCAATGACCGACTCTGAGTGGGCCGAGCTGCTGGGCCGAGTGGTACATCAGGTGACGGAGAGCCTGAAGGCCATGACGGGGATCAAAGTGAAGGTGGACCAGGAGAAGGTGGTGAAGAGCCTGGAGCTCGGCCAGTTCCTTGTCAGGACGGTCCAGAAGCAGAAGCTGCCCGTCAGCCTGGCACAGCTCCAGCTGGCTCTGCATCCTCTGAGTCAGATGGCGGGCTTCCGGAAAACCGGACACCTGGAGGACACCTACTGGAGCGTCATGAAGCTGCTCGGAGTCACGAAACCCAAAGTGGAGAAGGTGAGGAAGGCCGAGGCTGAGCCGGCGACTCCCAAGAAGAAGAAAGGCTTCCTGCCTGAGACGAAGAAACGCAAAAACCGCAAGAAGGCCCCGGTGCCAGAAGTGAAGGGGGAGCCCCTGAAGGAGAGCGGGGAGaatggagagaaggagggagggcaggggaagaagaaaaggaacaagaataaaaacaagaacaagaggAAGCAAGGATTTGGAGAAGCCGGGCCGGGCCAGGCGCCCGCCAAGAAGCCCAAACTCCAGGCAGTGGGGAAGCAGAAGAAAACCAAGAGGAAGCTGGGAGGGGAGTAAAGGAAACGGCGACGGACTCTGAGGACTCGAATCTCACAACTCAATTTAAATTCCCCCCCACTGTTCGTTGTGTATTGCTGATGTTGCCATCGGACGGACGTTCAGCTGATCAGCAGCGTCTGTCTGCATTTTGAGTTTGTTCTCATTCGGTCCTTGACTttgttttatgatgatgatgatgaagactGGAGGGTTAATCTCCAGAGGTTACTCATCCTGCAAGTGTTAAATATCTGtgcaattttgtttgttttgcaaatatacTGTTTTTAGAGTGTGCCGCTGTGTCTGTCGGTTTGTGTCGTGTACATGTTTGTTGAGGAGGCTGTGCAGAGTGTAGATGTGGTCGGTGGTGCGGTGTTTGGGAAGAAAGCCGATCTGGCCTCTGTGCAGCACACTGTGCTCTGACGGAAGCTCAGGATTGTGCTGTTCACGATGCTGCAGAAGCGTATAAAGTAAACCACGTGTTTATAAAAGCACGTCTGCTGTACTAGTGTGTTGTGTCGACTAGTTACCGCCTTTCCCCACACGGGGGCAGCATCAACGTCACAATCACTGCGTTTCACTGCCAAGTTCAAAGGCATGGTCCCGGC

Function

GO: NA

KEGG:

id description
K02331 POL5, MYBBP1A; DNA polymerase phi

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005459 True 4495 mRNA 0.59 27 1724009 1734069

Neighbor

gene id symbol gene type direction distance location
AMCG00005458 rfc2,LOC107669364,LOC107561059 coding upstream 26866 1692137 ~ 1697143 (+)
AMCG00005441 NA coding upstream 52648 1667718 ~ 1671361 (+)
AMCG00005442 NA coding upstream 110933 1598525 ~ 1613076 (+)
AMCG00005443 NA coding upstream 126358 1587411 ~ 1597651 (+)
AMCG00005444 NA coding upstream 139297 1579830 ~ 1584712 (+)
AMCG00005457 NA coding downstream 6602 1740671 ~ 1745867 (+)
AMCG00005430 NA coding downstream 163808 1897877 ~ 1908710 (+)
AMCG00005487 NA coding downstream 281947 2016016 ~ 2043288 (+)
AMCG00005486 NA coding downstream 314979 2049048 ~ 2055591 (+)
AMCG00005456 NA coding downstream 349165 2083234 ~ 2089877 (+)
G152198 NA non-coding upstream 262070 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 265262 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 470050 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 666614 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 709629 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 521296 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1337881 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1449752 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1465263 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1526141 3260210 ~ 3260429 (+)
AMCG00005434 NA other upstream 206429 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 344707 1376468 ~ 1379302 (+)
G152159 NA other upstream 356053 1367014 ~ 1367956 (+)
G151969 NA other upstream 1186646 536751 ~ 537363 (+)
G151967 NA other upstream 1324144 398925 ~ 399865 (+)
G152267 NA other downstream 11891 1745960 ~ 1748934 (+)
G152337 NA other downstream 65742 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 195386 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 769841 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 1111148 2845217 ~ 2849608 (+)

Expression


Co-expression Network