AMCG00005462


Basic Information

Item Value
gene id AMCG00005462
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1754913 ~ 1774451 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005462
ATGTTGCCTGTGCTGCTGTGCGGGGCTGTGTTTTTCCCCGGGCTCTTCTACCTCTCCCGGAGGCTGCTCGCCCGCACTTTCCGACGGTGGGACGATGCGGACGTGGTGTTGGTGAGCGAGAGACACTGGCTGGCCACCTACTTCGTCTGGTTCGCCATGCCCTATATGGCCTACGACATCTACGCTATGTACCTCAGCCACTGGTACCGCTTCCGGGTGAAAGGTCACGAGGAGTACAAGGTGCACTCGTTCCGCACCGTCAACACTTTCGTGCGAAGGGAATTTCTGCTGTTCTTCAGGAAGGATCTGGGGGACTTCTTCATCGGCTGCCTGTTCACGGCTGAGCTCAGCACTCCCTTCGTGTCTCTGGGGAAGATTCTGATCCAGCTGGGCCTACAAGACTGTGTCCTGCACAAGATCAACGGCGTGGTGGTGCTGCTCAGCTTCTTCCTCTGCCGGATTCTGCTCTTCCCCTACATGTACTGGGCGTACGGGCGGCACTACGGCATCCCTCTCTACAGCGTGCCCTTCCACCTGCCCCTCAGCTGCAACCTGGGCAACCTCTGCATCATGGCCCCCCAGGTCTACTGGTTCGTGCTCCTGTGTCGAAAGGGGTTCCGCTTGTACCAGCGCCAGGCGAAAATGCGCGACGCCGAGGGCACAGAACCCCCCAAGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005462 True 678 mRNA 0.60 4 1754913 1774451

Neighbor

gene id symbol gene type direction distance location
AMCG00005460 NA coding downstream 47127 1697277 ~ 1707786 (-)
AMCG00005447 LOC106580668 coding downstream 69453 1675244 ~ 1685460 (-)
AMCG00005446 NA coding downstream 88548 1660027 ~ 1666365 (-)
AMCG00005445 fzd9,LOC106567714,LOC106612580,LOC107713270,LOC107691950,LOC107709816 coding downstream 117417 1635745 ~ 1637496 (-)
AMCG00005438 NA coding downstream 180157 1570753 ~ 1574756 (-)
AMCG00005420 NA coding upstream 28466 1802917 ~ 1808080 (-)
AMCG00005421 lrrc75a,LOC107585608,LOC107664947,LOC108278186,LOC106935686,LOC107690424,LOC107744770 coding upstream 65116 1839567 ~ 1857205 (-)
AMCG00005431 NA coding upstream 174770 1949221 ~ 1956060 (-)
AMCG00005488 NA coding upstream 283531 2057982 ~ 2059253 (-)
AMCG00005489 NA coding upstream 295914 2070365 ~ 2073296 (-)
G152335 NA non-coding downstream 2175 1745953 ~ 1752738 (-)
G152320 NA non-coding downstream 61358 1692749 ~ 1693555 (-)
G152197 NA non-coding downstream 296251 1458237 ~ 1458662 (-)
G152178 NA non-coding downstream 356521 1397341 ~ 1398392 (-)
G152085 NA non-coding downstream 684257 1065459 ~ 1070656 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding upstream 166572 1941023 ~ 1946800 (-)
G152424 NA non-coding upstream 393153 2167604 ~ 2175954 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding upstream 520382 2294833 ~ 2318672 (-)
G152473 NA non-coding upstream 640621 2415072 ~ 2445097 (-)
G152652 NA non-coding upstream 1385606 3160057 ~ 3160364 (-)
AMCG00005461 eif4h other downstream 31413 1708683 ~ 1723500 (-)
G152271 NA other downstream 139416 1521742 ~ 1615497 (-)
G152277 NA other downstream 247285 1505940 ~ 1507628 (-)
AMCG00005419 NA other downstream 378440 1371342 ~ 1376473 (-)
G152133 NA other downstream 419473 1219327 ~ 1335440 (-)
AMCG00005532 NA other upstream 422903 2197354 ~ 2329684 (-)
AMCG00005517 NA other upstream 632074 2406525 ~ 2410247 (-)
AMCG00005491 supt6h,LOC107603297 other upstream 1098055 2872506 ~ 2890448 (-)
G152645 NA other upstream 1297409 3071860 ~ 3090714 (-)
AMCG00005525 LOC106567758 other upstream 1832510 3606961 ~ 3632712 (-)

Expression


Co-expression Network