AMCG00005464


Basic Information

Item Value
gene id AMCG00005464
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1073052 ~ 1081418 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005464
CCGCTGCAGCCGCTCCCTGCGTCCCCTCCATCGGGGGAAGTGTCTCCGCCGGGCAGGCCCCCGTTCCTCCCTCAGGAGGGTGGGCGGTTCAGAGGAGAGCGAGGCTGGGACGTCCCGTAGTCTCCAGAGCCCCAGTGTGGGATGGACGGAGCCGGCAGAGAGCAAGTAAACACGGCGAACCAGAGGACAGAGGAGGGCGATGTGGGTGTCTGTGCTGGACGCGAGTGCCAGGGTTTAGCGGTCACTGGTAGCGCGTAGTCCGCTGTCGCTGCACAGATGCGTCTCCGGCCCCGAGGGGCGCCCTGGCCGCCGGGGCTGCGGCTCCTCCTCCCGCTGCTCTTCGTGACCAGGACGCTCAGCTCGCCGGTGGCCGGCAGCCGGGGTGCGCCGAGCGCTGCCGCGGAGGGCTTCCTGGAGAAGTATGGATACCTGGACCAGGAGGGCCACCGGCACGACGTGGCGGAGGTGACATCAGCAGTCAGGGAGTTTCAGTGGCTGTCTCACCTGCCCGTCACCGGGCGCCTGGACAGCAGCACCATGCGGCTGATGGGGGAGCCGCGGTGTGGGGTGCGAGACGGCCAGAGTCCCCGGGCCTGGGCCCAGCGGGTCAGACGGATTGTCTTGGGCAATGCAGCTACGCCCAACACACGCCAACGTAGCAAACGCTACAGCCAGCAAGGTGAGGCTGGCGGTGCGCTCGGCCTTCACCCTGTGGGGCAACGTGAGCGCTGGACGCTGGGGGAAGGGAAGGGGCACAACCTGCTGGTGGTGCTGGCGCATGAGATCGGGCACACGCTGGGGCTGCAGCACTCGCCCGTCCGCAACGCCCTCATGTCGCCGTACTACAAGAGGCTGGGCGCCGCGCCGCTGCTGGGCTGGGATGACATCGCCGCCGTGCAGCAGCTCTACGGAAAGCCCCCCAGTGGGCGGGTGGTGCAGCTGCCTGGCCGAGCGTTCAGTGCCCTCCTGCAGGACTGGCATCCTGGGCAGCGGGGGGCGGCTCAGGACTCTGGAACGGCCCAGCCCCAGTACTGCCATGCCTACTTTGATGCCATCACTACGGACCTGGATGGCTCGGTGCTGGTGTTCAGAGGAGGACAGTTCTGGACGGTGTCAGCCGGGGGCAACGTGAGTGCCGCGCAGCTCCTCCAGCACAGATGGCCGCAGCTGCCCCCTGCCATCGAAGCGGCGGCCGTCTCCCCCACCGACGGCAAGATCTACTTCTTCAGAGGTGGACGGTACTGGCGCTACACGGGCGGCACGCTGGACACCGGCTTCCCCAAGAGGAGCAGCCTGGCGGGGCTGCCCAGACACCCGGACTGCGCCTTCTACTACCCCCCCCTGGGCCGCATGGTGCTGCTGAAGGGCCGGCGCTACTCCGTGCTGAACCTGCGCTCGCCGGGCCCGGAGCCCTACTACCCCCGCGGCCTGGCCGACTGGAGGGGGGTCCCGCAGGGGGCCAACGGGGCGGCGTGGCGGCCCGACGGGCAGCTGTACTTCTTCAAGGACCGGCTGTTCTGGAGGTTCGACCCTGCCCGGGTGCGGGCGGTCAGCAGCGGGGACTGGGCCCATGAGCTGGACTGGACTGGCTGCCAGAGGTCAAGGGGCACGGACGCCAACGCCATCCACTGACCCCCCGCAGCGGGCTGGGGAGACGGAGCCGGGGGGACAGATGTGCAATCTCGGAGATGTTCCGCCtgttcactgttgtgttgctgctgctcTCATTTAATTCGGTGTAATCGGagcaaatatatgtatatatttcagattttctaTCCTcacacaaatgtgtattttttatgtataatatagAAATTGAATCCTGAGCTGCGTTGTTCTGAGCACCTCGTGGTCACATTGTTAAATCACTCCTGCACTTTCCTTTAACAgccattgttattgttatcatttGAACTAAAGAAATCCTGTTCTTGTGATATTTTTCCTGCTGCAATAatcatgtttaaatgtgtgtataaatgtgtataccTTGACGaaagcacgatggggtgaatggcctcctcggTTGGAAACTTTTTGTTCTTAACTGCTTCATGTCTTGTGTGTTGCTGCCCTCTTTTGGTGGAGGCGCTCCACTGCAGGCTGCGGGTAACACACCTCCTATTGCGCATCATACAGTGCGCAGTGCTGCACAGCTTCAGCTATAAACACGCTTCACACTTCAGCATGAGTTTAATCAGTCAACATATCCCGCTGAATTGTAACGTCTATAAGATCCGACGGACAGAGGCTGCGCAGCACCAGCGCCCACCTCCTCGGCAGGAAAGCAGCTGCTTCAATAAAGCACCAACACTGAATGTGACAGGACGTGTTGCCTGATATCTTTGTATTGTTTCCATATGGTATGCAGGTTAATGGCGGAGTTAGTACGCGAATTAATAGTAGTAGAATTTAGGTTAGCAAGTAATATGCTAATAGTATGTTAGTTAGTAAGTAGGtgtagtataatagcaggtatGTTCATG

Function

GO: NA

KEGG:

id description
K08006 MMP28; matrix metalloproteinase-28 (epilysin)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005464 True 2489 mRNA 0.60 8 1073052 1081418

Neighbor

gene id symbol gene type direction distance location
AMCG00005466 NA coding upstream 811 1063490 ~ 1072241 (+)
AMCG00005465 NA coding upstream 37021 1030879 ~ 1036031 (+)
AMCG00005467 NA coding upstream 42553 1027198 ~ 1030499 (+)
AMCG00005463 NA coding upstream 59659 1004963 ~ 1013393 (+)
AMCG00005469 ap2b1,LOC107681897,LOC106603458 coding upstream 74218 988627 ~ 998834 (+)
AMCG00005390 NA coding downstream 1740 1083158 ~ 1090681 (+)
AMCG00005410 NA coding downstream 132739 1214157 ~ 1244875 (+)
AMCG00005411 cux1,LOC105006988 coding downstream 173624 1255042 ~ 1258125 (+)
AMCG00005415 LOC107573094,LOC107551239 coding downstream 202869 1284287 ~ 1295448 (+)
AMCG00005414 wbscr22 coding downstream 219619 1301037 ~ 1305072 (+)
G152053 NA non-coding upstream 15657 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 58672 1014078 ~ 1014380 (+)
G151978 NA non-coding upstream 382116 690659 ~ 690936 (+)
G151968 NA non-coding upstream 536360 535895 ~ 536692 (+)
G151964 NA non-coding upstream 712760 360093 ~ 360292 (+)
G152111 NA non-coding downstream 163613 1245031 ~ 1253959 (+)
G152196 NA non-coding downstream 376736 1458154 ~ 1458747 (+)
G152198 NA non-coding downstream 380306 1461724 ~ 1461939 (+)
G152397 NA non-coding downstream 1173947 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1990532 3071950 ~ 3090655 (+)
G151969 NA other upstream 535689 536751 ~ 537363 (+)
G151967 NA other upstream 673187 398925 ~ 399865 (+)
G152159 NA other downstream 285596 1367014 ~ 1367956 (+)
AMCG00005418 NA other downstream 295050 1376468 ~ 1379302 (+)
AMCG00005434 NA other downstream 428084 1509502 ~ 1517580 (+)
G152267 NA other downstream 664542 1745960 ~ 1748934 (+)
G152337 NA other downstream 718393 1799811 ~ 1803903 (+)

Expression


Co-expression Network