AMCG00005465


Basic Information

Item Value
gene id AMCG00005465
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1030879 ~ 1036031 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005465
GCAGGGAGCCGGCAGGGCGTCCTGAGGTCTGGACTCAACGGAGCAGAACCGGACCGACGCGCAGACACAGCAGCCGCCGCACACGATGTCCCTCGGCCCGTCCTGCCTGAGCGAGTGTGTCCAGGAGTGGGAGGACCTGGAGAAGGACTTCCAGCTCATCCAGGACACTCACAAGCTGTACCGGCAGAAGCTGGACGAGTTGACCAAACTGCAGTCCGGCTTCTCCGCCTCCATTGCCCGGCACAAGCACAAGCTGGGGGAGCTGTCCCAGGTGCTGACAGAATGCAGGCGCAGCGCCGGCCCCGAGGAGGCCGACAACATCGACCGGATCCAGGCGCTGATCAGAGAGCGGCCCGGCGTGTTCTTCGACATGGaggccttcctgcccaagaaGAACGGatTGTACCTCAGCCTCGTCCTGGGGAACGTGAACGTCACTCTGCTGAGCAAACAGTCCAAGTTTGCCTATAAGGGCGAGTACGAGAAATTCAAGCTGTGTCTCACCatcctgctgctgctcttctCCTTCACCTGCAGGTTCCTGGTCTCTAACAGGGCTGTGGACGCGCTCTTCAACTTCCTGCTGGTGTGGTACTACTGCACCCTGACCATCCGAGAGAGCATCCTCATCAACAACGGCTCCAGgaTCAAGGGCTGGTGGGTCTTCCATCACTATGTGTCCACCTTCCTGTCGGGAGTCATGCTGACCTGGCCGGACGGGAGGCTGTACCAGATGTTCAGGAACCAGTTCCTGGCCTACTCCCTGTACCAGAGCTTTGTCCAGTTTCTCCAGTACTACTATCAGAGCAGCTGTCTGTACCGCCTGCGGGCCctgggagagagacacaccatGGACCTGActgtggAGGGCTTCCAGTCGTGGATGTGGCGTGGCCTGACCTTCCTGCTGCCCTTCCTGTTCTTCGGCCACttcTGGCAGCTCTACAACGGACTCACTCTCGTCAGGATGGCTAAGCTGCCGGACTGCAAGGAGTGGCAGgtgCTCATGTGCAGCCTCGCCTACCTCGTGCTGTTCACAGGCAATTTCTGCACCACGCTGGCCGTTGTCTACCAAAAGATCCAGAACAAGAAGCAAAGCAAAGACAAGCAGCTATGAGGGAGAGGatgcgagcgagagagagggagaggatattatatatatatataatttgggaGCTCCCATTAGCACTCCATTGCAGAAGGCCTGGCACCTCACAGTCAGTCCAATCTGATACcagatgtgtattttgttgtcCATGTGTACCTTGTCTCGATTCTACCGGTGTGTCCAGAGCATGGCTGTCAAGTGTCTTTCAATGCTTACCGCTGTGTGAACAGTGTGTTACACTACCCACCAAATAAGATGTGATTAGACTTCCAGTTTGGGGATCTATAACACACCAGTGCCTCTTCTAGAACGCGGGCTGGCAAAGAGAACGCTACGAGGGAACTAACGTGTTACCGTCGCTAATTCTAACCCCCCAGTCAAAGAAGATATCCAAAGCATCTCTCACTATACCTCACCAAACCTCAGGGTCGCTTCTCCAAACTAACCGCAGCTCTGAATCTCCGCCTGCGCAGAACGTGTGCAGGAACGCGTCTGGCCCCGATCACCATGTGTGAGGCCATCGAGCACTTTTATAGTTATAGAGAAGTAattgagtttgttttttcttttgttttttgggggaagCTTCGCATCTTGCTGAAAGTGACCAAGACCTGCAAGTCCTTTTTCAGATTGTGCCTGATGTTAAACTCAGTTCTTACCCCTTCCCTCCATCCTTCTGGTCTCAATGTTTTTTAACGAGAAGATGCATCGATTAGTCACCCTGAAATTGCAGTCAGACCGCAGATTCAGGCTCAAGTCTCGCTCTCCATCCCCTCGTGGGTCACAGGAACGGGCGGACGGGGGCGACtgcattaaatacacatttaaagtcACTAGGAAAACAAGCCGCTATATTATAGCGAGTGAAAACCCAGTTGTGCCCACTAGTTGTGATCGGGACCCTGGCATcgtgtgtggctgtgtggatTTGTCTCACACCAGCGAGTGGGTCAGGGGTGAGTCTCGTTACTTTAAAGGTTTTGAaagtttgcattaaaaaaagaaataaaagtgaTGTGTGAGTCTCTGCTTTGATTTTTGTGGTTTGTGGCAGCGTGAGGAGAGAGACG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005465 True 2181 mRNA 0.53 12 1030879 1036031

Neighbor

gene id symbol gene type direction distance location
AMCG00005467 NA coding upstream 380 1027198 ~ 1030499 (+)
AMCG00005463 NA coding upstream 17486 1004963 ~ 1013393 (+)
AMCG00005469 ap2b1,LOC107681897,LOC106603458 coding upstream 32045 988627 ~ 998834 (+)
AMCG00005470 NA coding upstream 43172 987348 ~ 987707 (+)
AMCG00005471 NA coding upstream 43944 986631 ~ 986935 (+)
AMCG00005466 NA coding downstream 27459 1063490 ~ 1072241 (+)
AMCG00005464 NA coding downstream 37021 1073052 ~ 1081418 (+)
AMCG00005390 NA coding downstream 47127 1083158 ~ 1090681 (+)
AMCG00005410 NA coding downstream 178126 1214157 ~ 1244875 (+)
AMCG00005411 cux1,LOC105006988 coding downstream 219011 1255042 ~ 1258125 (+)
G152040 NA non-coding upstream 16499 1014078 ~ 1014380 (+)
G151978 NA non-coding upstream 339943 690659 ~ 690936 (+)
G151968 NA non-coding upstream 494187 535895 ~ 536692 (+)
G151964 NA non-coding upstream 670587 360093 ~ 360292 (+)
G151963 LOC107691770,LOC107571976,LOC107709746 non-coding upstream 675019 355581 ~ 355860 (+)
G152053 NA non-coding downstream 21154 1057185 ~ 1057395 (+)
G152111 NA non-coding downstream 209000 1245031 ~ 1253959 (+)
G152196 NA non-coding downstream 422123 1458154 ~ 1458747 (+)
G152198 NA non-coding downstream 425693 1461724 ~ 1461939 (+)
G152397 NA non-coding downstream 1219334 2255365 ~ 2323345 (+)
G151969 NA other upstream 493516 536751 ~ 537363 (+)
G151967 NA other upstream 631014 398925 ~ 399865 (+)
G152159 NA other downstream 330983 1367014 ~ 1367956 (+)
AMCG00005418 NA other downstream 340437 1376468 ~ 1379302 (+)
AMCG00005434 NA other downstream 473471 1509502 ~ 1517580 (+)
G152267 NA other downstream 709929 1745960 ~ 1748934 (+)
G152337 NA other downstream 763780 1799811 ~ 1803903 (+)

Expression


Co-expression Network