AMCG00005466


Basic Information

Item Value
gene id AMCG00005466
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1063490 ~ 1072241 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005466
CGGCGGGAAGCGCTGGCAGGGTCGGAGTTAATAAGGTCCGCAGTGTGGTTCCGTCGCGGCCGTGTTTCCCAGAGTCGAGCAGGCGGGACAGCGGCTTTTACACGCAAACTGAGCCATGGCGTCGGATTCTGGCTATGGTCAGCCCGGTGCACAGCAACAAAGctaTGCATCATATCCTCCACCACCGACCCAGGGCTACCAGCAGACTCCACAGACCTACGGTCAGCCTAGTGACGGCAGCTCTTCCTATAGTCAGAGCTACGCAGGCTATGGATCGGGCTACGGCAACACTCAGCCAGCGGAAAGTTTCAGTCAGACGGCACAGCCCAGCAGCCAGGCGGGTTACGGACAGCAAGCATATGATGCCTACGGACAGCCGAGTGCTGAGCCTCCTACAGGGTATGGATCGAAGCCCCCGGCATCCTACGCCCAGCCGCCTGCCCACGAAGCACATGCACCACCCTCAGGAGGATCGCAGCACCGCAGCTACGCCAGCCGGGGCTACGATGGTGATGCTGCTCACGGTGTGAACAGGTATGGGGGAGAGGATGGGAGCTCAGGCCAGTCTGATGGGTACAGGAGCCGAGGGCGCGGCGGATATGACCGGGACGGAAGAGGCCCCTCATCTGGCCCCAAAGACTACGGACAGAAATCTGAGTCAGGTGGCGAGGACAACTCGGACAACAACACAATCTTTGTCCAGGGCCTGGGCGAGGATGTATCCCCAGACCAGGTGGCGACGTACTTCAAACAGATCGGCATCATTAAGCTGAACAAGAAAACCGGGCTGCCCATGATCAACCTGTACACCGACAAAGCCACGGGCAGACTGAAGGGAGAGGCCACGGTGTCGTATGAGGACCCGCCTTCTGCCAAAGCGGCCATCGAGTGGTTTGATGGGAAGGAGTTCAACGGGAAACCGATCAAGGTGTCCTTCGCTACGAGGAGGCCCGAGTTCATGCAGAGAGGAGGCCGCGGAGGGGGGCGTGGAGGCTCCCGGGGATATGGTGGCCGGGGGGGGggtggcggcggcggcggcggctaCGGTGGTGGCCCTGGTGCGGACATGAAGGGAGGAGACTGGCTGTGCCCCAACTCATCCTGTGGGAATATGAACTTCGCCAGAAGGATGGAGTGCAATCAGTGTGGCACCCCCAAGCCCGGGGACGGGGGCTCAGaCCGTGGCGGCCGGGGGGGGTTCGGAGGCGACCGGGGTGGATTCCGGGGCCGCGGGGGCTTCCGTGGCGGCCGTGGGGGTGACCGCGGTGGGGATCGCGGGGGATATGGATGGAAGATGGGAGGACGGCGACAGCAGAGGGGAGCGGCGGGAGCGGCCGTACTGAACCGGGACGACGGGCATCCCAGGGGTTCGGTGTGCGACTTGCCACCCAGCCCTTCCACCGTCGCCTCGGCCCGCTGGCTGCACAGGTGCGGCCCCTCGGAGTGGATCATCGCTGAGCAGCTGCTGTGAAAGGACTGTCTGAGGGGGGGGCgcattatgtaaaaaaacattttatttttgggggtgAAGATTCTCGCAGGTTTAGATGTGCAACATAAGGTAGACTTGTACAATTGCCAAAttgcatattgttttgtaatactGAATAAAGTGTTTTACTTCACA

Function

GO: NA

KEGG:

id description
K14651 TAF15, NPL3; transcription initiation factor TFIID subunit 15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005466 True 1627 mRNA 0.61 15 1063490 1072241

Neighbor

gene id symbol gene type direction distance location
AMCG00005465 NA coding upstream 27459 1030879 ~ 1036031 (+)
AMCG00005467 NA coding upstream 32991 1027198 ~ 1030499 (+)
AMCG00005463 NA coding upstream 50097 1004963 ~ 1013393 (+)
AMCG00005469 ap2b1,LOC107681897,LOC106603458 coding upstream 64656 988627 ~ 998834 (+)
AMCG00005470 NA coding upstream 75783 987348 ~ 987707 (+)
AMCG00005464 NA coding downstream 811 1073052 ~ 1081418 (+)
AMCG00005390 NA coding downstream 10917 1083158 ~ 1090681 (+)
AMCG00005410 NA coding downstream 141916 1214157 ~ 1244875 (+)
AMCG00005411 cux1,LOC105006988 coding downstream 182801 1255042 ~ 1258125 (+)
AMCG00005415 LOC107573094,LOC107551239 coding downstream 212046 1284287 ~ 1295448 (+)
G152053 NA non-coding upstream 6095 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 49110 1014078 ~ 1014380 (+)
G151978 NA non-coding upstream 372554 690659 ~ 690936 (+)
G151968 NA non-coding upstream 526798 535895 ~ 536692 (+)
G151964 NA non-coding upstream 703198 360093 ~ 360292 (+)
G152111 NA non-coding downstream 172790 1245031 ~ 1253959 (+)
G152196 NA non-coding downstream 385913 1458154 ~ 1458747 (+)
G152198 NA non-coding downstream 389483 1461724 ~ 1461939 (+)
G152397 NA non-coding downstream 1183124 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1999709 3071950 ~ 3090655 (+)
G151969 NA other upstream 526127 536751 ~ 537363 (+)
G151967 NA other upstream 663625 398925 ~ 399865 (+)
G152159 NA other downstream 294773 1367014 ~ 1367956 (+)
AMCG00005418 NA other downstream 304227 1376468 ~ 1379302 (+)
AMCG00005434 NA other downstream 437261 1509502 ~ 1517580 (+)
G152267 NA other downstream 673719 1745960 ~ 1748934 (+)
G152337 NA other downstream 727570 1799811 ~ 1803903 (+)

Expression


Co-expression Network